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  1. TreeAlgs-Fork TreeAlgs-Fork Public

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    TreeAlgs fork for experimenting with ARG simulations

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  2. augur augur Public

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    Pipeline components for real-time phylodynamic analysis

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  3. nextclade nextclade Public

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    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

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  4. ML_TreeBuilder_Review ML_TreeBuilder_Review Public

    Repository where I evaluate the performance of the ML Tree Builder PhyloFormer on simulated Influenza Data

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  5. MTKTools MTKTools Public

    This package contains methods for testing the accuracy of the MultiTreeKnit module of TreeKnit.jl

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  6. MTKSimulations MTKSimulations Public

    Repo for assessing the performance and accuracy of MultiTreeKnit

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