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Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

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Nextclade

Viral genome clade assignment, mutation calling, and sequence quality checks

by Nextstrain team

🌎 clades.nextstrain.org

nextclade.mp4
Brief demonstration of Nextclade Web. Large version is here.

License

CircleCI master branch CircleCI staging branch CircleCI release branch CircleCI release-cli branch Security Headers Mozilla Observatory

GitHub last commit GitHub commit activity GitHub contributors DeepScan grade

Nextclade European Galaxy server

package.json version GitHub releases Nextclade Docker image version Nextclade Docker image version

JOSS publication


Visit clades.nextstrain.org button

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πŸ“œοΈ Citation

If you use results obtained with Nextclade in a publication, please

πŸ“— Documentation

πŸ§‘β€πŸ’» Development

Read developer guide here: docs/dev/developer-guide.md

✨ Team

Nextclade is a part of Nextstrain logo Nextstrain project .

It is maintained by:

Ivan Aksamentov

Senior Software Engineer
NeherLab, Biozentrum, University of Basel
Swiss Institute of Bioinformatics

Richard Neher

Principal Investigator
NeherLab, Biozentrum, University of Basel
Swiss Institute of Bioinformatics

Cornelius Roemer

Staff Scientist
NeherLab, Biozentrum, University of Basel
Swiss Institute of Bioinformatics

We are thankful to all our contributors, no matter how they contribute: in ideas, science, code, documentation or otherwise. Thanks goes to these people (emoji key):

Emma Hodcroft
Emma Hodcroft

πŸ€” ⚠️ πŸ“’ πŸ‘€
Anna Parker
Anna Parker

πŸ’» ⚠️ πŸ€”
Thomas Sibley
Thomas Sibley

πŸš‡ πŸ›‘οΈ
Victor Lin
Victor Lin

πŸ’» πŸ“–
Theo Sanderson
Theo Sanderson

πŸ’»
Natalie Stroud
Natalie Stroud

πŸ–‹ 🌍
Alex Rubinsteyn
Alex Rubinsteyn

πŸ“–
Christopher Bottoms
Christopher Bottoms

πŸ“–
Finlay Maguire
Finlay Maguire

πŸ“–
dnanto
dnanto

πŸ’» πŸ”£

This project follows the all-contributors specification. Contributions of any kind welcome!

🏒 Sponsors

We are thankful to the following companies who supported us:

Vercel logo Vercel for sponsoring Nextclade builds on their platform

βš–οΈ License

MIT License