Bump synapseclient from 2.5.1 to 2.7.0 in /conda/sage-bionetworks

[dependabot]

Bumps synapseclient from 2.5.1 to 2.7.0.

Release notes

Sourced from synapseclient's releases.

v2.7.0

Bug Fixes

• [SYNPY-226] - isConsistent fails as parameter for table query
• [SYNPY-562] - Make sure SQL functions, including "year", are quoted correctly
• [SYNPY-1031] - File version increments with 400 client error
• [SYNPY-1219] - Update Entity class to be compatible with the new Dataset entity
• [SYNPY-1224] - Correct SynapseUnmetAccessRestrictions message
• [SYNPY-1237] - as_table_columns function is mishandling mixed data types

Stories

• [SYNPY-63] - py: use metaclass to replace the _entity_type_to_class hack
• [SYNPY-992] - synapseutils changeFileMetadata missing syn parameter docstring
• [SYNPY-1175] - Programmatic Support for Download V2 via Py Client
• [SYNPY-1193] - Support Datasets functionality
• [SYNPY-1221] - Set up gh-action: black, the python auto formatter on the python client

Sub-Tasks

• [SYNPY-1207] - Support syn.get() on a dataset

Tasks

• [SYNPY-566] - Clarify expected list format for sync manifest
• [SYNPY-1053] - Increase documentation of forceVersion in syncToSynapse
• [SYNPY-1145] - Link to manifest format in CLI sync command usage help
• [SYNPY-1226] - Leverage ViewBase for Datasets instead of SchemaBase
• [SYNPY-1235] - Create codeql scanning workflow

Contributors

• @​danlu1
• @​thomasyu888
• @​allaway
• @​vpchung

New Contributors

• @​vpchung made their first contribution in Sage-Bionetworks/synapsePythonClient#914

Full Changelog: Sage-Bionetworks/synapsePythonClient@v2.6.0...v2.7.0

v2.6.0

Bug Fixes

• [SYNPY-1204] - Python 3.10 compatibility

Stories

• [SYNPY-728] - Improve error message when pandas is not available

... (truncated)

Changelog

Sourced from synapseclient's changelog.

2.7.0 (2022-09-16)

Highlights

• Added support for Datasets

  .. code-block:: python

    # from python
    import synapseclient
    import synapseutils
    syn = synapseclient.login()
    dataset_items = [
        {'entityId': "syn000", 'versionNumber': 1},
        {...},
    ]
    dataset = synapseclient.Dataset(
        name="My Dataset",
        parent=project,
        dataset_items=dataset_items
    )
    dataset = syn.store(dataset)
    # Add/remove specific Synapse IDs to/from the Dataset
    dataset.add_item({'entityId': "syn111", 'versionNumber': 1})
    dataset.remove_item("syn000")
    dataset = syn.store(dataset)
    # Add a single Folder to the Dataset
    # this will recursively add all the files in the folder
    dataset.add_folder("syn123")
    # Add a list of Folders, overwriting any existing files in the dataset
    dataset.add_folders(["syn456", "syn789"], force=True)
    dataset = syn.store(dataset)
    # Create snapshot version of dataset
    syn.create_snapshot_version(
        dataset.id,
        label="v1.0",
        comment="This is version 1"
    )
  

• Added support for downloading from download cart. You can use this feature by first adding items to your download cart on Synapse.

  .. code-block:: python

    # from python
    import synapseclient
    import synapseutils
    syn = synapseclient.login()
  

... (truncated)

Commits

• 663ba3b Merge pull request #942 from Sage-Bionetworks/update-cicd
• 936db71 Bump ubuntu version
• 4b3edc6 Update cicd os
• 66214c1 Merge branch 'v2.7.0-rc-dev'
• 661636c Fix header
• 84c7abf Update date
• a682355 Merge branch 'v2.7.0-rc-dev'
• 92235c6 Push changes
• 8a80605 CI/CD
• 817e785 Push change to date
• Additional commits viewable in compare view

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[dependabot]

Superseded by #105.