In batch run accept the storage and temp directories arguments as des…

…cribed in the docs.
jodyphelan · Aug 24, 2024 · 9364bda · 9364bda
1 parent 91dfe78
commit 9364bda
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/tb-profiler b/tb-profiler
@@ -304,7 +304,7 @@ def main_batch(args):
 
 
     for row in csv.DictReader(open(args.csv)):
-        line = f"tb-profiler profile -p {row['id']} --threads {args.threads_per_job}"
+        line = f"tb-profiler profile -p {row['id']} --temp {args.temp} --dir {args.dir} --threads {args.threads_per_job}"
         if "bam" in row:
             line += f" -a {row['bam']}" 
         elif "read1" in row: