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[WIP] Prototype icons #132

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[WIP] Prototype icons #132

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1bcb7e5
Adding a partial to hold an icon for each page of the website.
sjayellis May 22, 2020
15921e1
Adding icon for each page to menu bar.
sjayellis May 22, 2020
d11cbe0
Adding icon partials to references of each page type.
sjayellis May 22, 2020
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12 changes: 6 additions & 6 deletions config.toml
100644 → 100755
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Expand Up @@ -29,13 +29,13 @@ ignoreFiles = ["README.md$"]
[[menu.main]]
parent = "Biology"
url = "/proteins/"
name = "Proteins and Virion"
name = "🝪 Proteins and Virion"
weight = 1

[[menu.main]]
parent = "Biology"
url = "/targets/"
name = "Target Modalities"
name = "🞜 Target Modalities"
weight = 2


Expand All @@ -47,19 +47,19 @@ ignoreFiles = ["README.md$"]
[[menu.main]]
parent = "Viral/Host Structural Data"
url = "/structures"
name = "Structures"
name = "◳ Structures"
weight = 1

[[menu.main]]
parent = "Viral/Host Structural Data"
url = "/models"
name = "Models"
name = "⊧ Models"
weight = 2

[[menu.main]]
parent = "Viral/Host Structural Data"
url = "/simulations"
name = "Simulations"
name = "⮔ Simulations"
weight = 2

[[menu.main]]
Expand All @@ -71,7 +71,7 @@ ignoreFiles = ["README.md$"]
[[menu.main]]
parent = "Therapeutics"
url = "/therapeutics"
name = "All Therapeutics"
name = "💊 All Therapeutics"
weight = 1

[[menu.main]]
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2 changes: 1 addition & 1 deletion themes/minimal/layouts/models/single.html
100644 → 100755
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Expand Up @@ -98,7 +98,7 @@ <h3 align="left" class="anchor" id="{{ .name | anchorize }}"><b><a href='{{index
{{ end }}
{{ end }}
{{ if $localScratch.Get "has_content" }}
<h3 align="left"><u><a style="color:black;" href='{{ $t_map.link }}'>{{$t_map.name}}</a></u></h3>
<h3 align="left"><u><a style="color:black;" href='{{ $t_map.link }}'>{{ partial "target_icon" }} {{$t_map.name}}</a></u></h3>
<!-- Finally Models -->
{{ range sort $.Site.Data.models "rating" "desc" }}
{{ $protein := $localScratch.Get "protein" }}
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4 changes: 2 additions & 2 deletions themes/minimal/layouts/partials/model-entry.html
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Expand Up @@ -24,7 +24,7 @@ <h5 align="center">{{ .model.creator }}</h5>
<h5 align="left"><b>Represented Proteins: </b>
{{ range $pname := .model.proteins }}
{{ $plink := print ($localScratch.Get "context").Site.BaseURL "/proteins/#" ( $pname | anchorize) }}
<a href="{{ $plink }}"><kbd class="bg-primary" style="">{{ $pname }}</kbd></a>
<a href="{{ $plink }}"><kbd class="bg-primary" style="">{{ partial "protein_icon" }} {{ $pname }}</kbd></a>
{{ end }}
</h5>

Expand Down Expand Up @@ -71,7 +71,7 @@ <h5 align="left"><b>Simulations:</b></h5>
{{ $anchor := print ( $sim.title | anchorize) "-" ( $.protein | anchorize) "-" ( $.target | anchorize) }}
<h5 align="left">
<p>
<a href='{{ $localScratch.Get "BaseURL" }}/simulations/#{{ $anchor }}'><kbd class="alert-secondary">{{ $sim.title }}</kbd></a>
<a href='{{ $localScratch.Get "BaseURL" }}/simulations/#{{ $anchor }}'><kbd class="alert-secondary">{{ partial "simulation_icon" }} {{ $sim.title }}</kbd></a>
{{ partial "general-marker" $sim }}
</p>
</h5>
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1 change: 1 addition & 0 deletions themes/minimal/layouts/partials/models_icon.html
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@@ -0,0 +1 @@
⊧
4 changes: 2 additions & 2 deletions themes/minimal/layouts/partials/protein-entry.html
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Expand Up @@ -79,7 +79,7 @@ <h5 align="left">
{{ $anchor := print ( $model.name | anchorize) "-" ( $.protein.protein | anchorize) "-" ( $target | anchorize) }}
{{ $model_url := print $.context.Site.BaseURL "/models/#" $anchor }}
<a href='{{ $model_url }}'>
<kbd class="alert-info">{{ $model.name | title }}{{partial "stars" $model.rating}}</kbd>
<kbd class="alert-info">{{ partial "models_icon" }} {{ $model.name | title }}{{partial "stars" $model.rating}}</kbd>
</a>
{{ partial "general-marker" $model }}
</p>
Expand All @@ -99,7 +99,7 @@ <h5 align="left">
{{ if and (in .proteins $.protein.protein) (lt ($localScratch.Get "postedSim") 2) }}
<!-- TODO: Map the anchor to *a* target instead of just the protein heade-->
<p>
<a href='{{ $localScratch.Get "BaseURL" }}/simulations/#{{ $.protein.name | anchorize }}'><kbd class="alert-secondary">{{ $sim.title}}</kbd></a>
<a href='{{ $localScratch.Get "BaseURL" }}/simulations/#{{ $.protein.name | anchorize }}'><kbd class="alert-secondary">{{ partial "simulation_icon" }} {{ $sim.title}}</kbd></a>
{{ partial "general-marker" $sim }}
<!-- Add to the counter -->
{{ $localScratch.Set "postedSim" (add ($localScratch.Get "postedSim") 1 )}}
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1 change: 1 addition & 0 deletions themes/minimal/layouts/partials/protein_icon.html
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🝪
8 changes: 4 additions & 4 deletions themes/minimal/layouts/partials/simulation-entry.html
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Expand Up @@ -77,7 +77,7 @@ <h5 align="left">
<h5 align="left">
<b>Trajectory:</b>
{{ if .simulation.trajectory }}
<a href="{{ .simulation.trajectory }}"><kbd class="alert-secondary">Get Trajectory ({{.simulation.size}})</kbd></a>
<a href="{{ .simulation.trajectory }}"><kbd class="alert-secondary">{{ partial "trajectory_icon" }} Get Trajectory ({{.simulation.size}})</kbd></a>
{{ else }}
---
{{ end }}
Expand All @@ -87,7 +87,7 @@ <h5 align="left">
<h5 align="left">
<b>Represented Proteins:</b>
{{ range .simulation.proteins }}
<a href='{{ index ($localScratch.Get "protein_map") . }}'><kbd class="bg-primary">{{ . }}</kbd></a>
<a href='{{ index ($localScratch.Get "protein_map") . }}'><kbd class="bg-primary">{{ partial "protein_icon" }} {{ . }}</kbd></a>
{{ else }}
---
{{ end }}
Expand All @@ -98,7 +98,7 @@ <h5 align="left">
<b>Represented Structures:</b>
{{ range .simulation.structures }}
{{ $anchor := print ( . | upper | anchorize) "-" ( $.protein | anchorize) }}
<a href='{{ $.context.Site.BaseURL }}/structures/#{{ $anchor }}'><kbd class="alert-danger">{{.}}</kbd></a>
<a href='{{ $.context.Site.BaseURL }}/structures/#{{ $anchor }}'><kbd class="alert-danger">{{ partial "structure_icon" }} {{.}}</kbd></a>
{{ else }}
---
{{ end }}
Expand All @@ -112,7 +112,7 @@ <h5 align="left">
{{ range $mname, $mdata := $.context.Site.Data.models }}
{{ if eq $model $mname }}
{{ $anchor := print ( $mdata.name | anchorize) "-" ( $.protein | anchorize) "-" ( $.target | anchorize) }}
<a href='{{ $.context.Site.BaseURL }}/models/#{{ $anchor }}'><kbd class="alert-info">{{ $mdata.name}}</kbd></a>
<a href='{{ $.context.Site.BaseURL }}/models/#{{ $anchor }}'><kbd class="alert-info">{{ partial "models_icon" }} {{ $mdata.name}}</kbd></a>
{{ end }}
{{ end }}
{{ else }}
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1 change: 1 addition & 0 deletions themes/minimal/layouts/partials/simulation_icon.html
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⮔
8 changes: 4 additions & 4 deletions themes/minimal/layouts/partials/structure-entry.html
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Expand Up @@ -112,7 +112,7 @@ <h5 align="left">
{{ $anchor := print ( $model.name | anchorize) "-" ( $.protein | anchorize) "-" ( $.target | anchorize) }}
{{ $model_url := print $.context.Site.BaseURL "/models/#" $anchor }}
<a href='{{ $model_url }}'>
<kbd>{{ $model.name | title }}{{partial "stars" $model.rating}}</kbd>
<kbd>{{ partial "models_icon" }} {{ $model.name | title }}{{partial "stars" $model.rating}}</kbd>
</a>
{{ partial "general-marker" $model }}
</p>
Expand All @@ -129,15 +129,15 @@ <h5 align="left">
<p>-->
{{ $targets := partial "ensure-slice" .structure.targets }}
{{ range $targets }}
<a href='{{ (index ($localScratch.Get "target_map") .).link }}'><kbd class="item-tag">{{ (index ($localScratch.Get "target_map") .).name | title }}</kbd></a>
<a href='{{ (index ($localScratch.Get "target_map") .).link }}'><kbd class="item-tag">{{ partial "target_icon" }} {{ (index ($localScratch.Get "target_map") .).name | title }}</kbd></a>
{{ end }}
<!--</p>-->
</h5>

<h5 align="left"><b>Related Proteins:</b>
{{ $proteins := partial "ensure-slice" .structure.proteins }}
{{ range $proteins }}
<a href='{{ index ($localScratch.Get "protein_map") . }}'><kbd class="bg-primary">{{ . }}</kbd></a>
<a href='{{ index ($localScratch.Get "protein_map") . }}'><kbd class="bg-primary">{{ partial "protein_icon" }} {{ . }}</kbd></a>
{{ end }}
</h5>

Expand All @@ -149,7 +149,7 @@ <h5 align="left"><b>Top Simulations:</b><a href='{{ $.context.Site.BaseURL }}/si
{{ if and ($sin) (lt ($localScratch.Get "postedSim") 2) }}
{{ $anchor := print ( $sim.title | anchorize) "-" ( $.protein | anchorize) "-" ( $.target | anchorize) }}
<h5 align="left"><p>
<a href='{{ $localScratch.Get "BaseURL" }}/simulations/#{{ $anchor }}'><kbd class="alert-secondary">{{ $sim.title }}</kbd></a>
<a href='{{ $localScratch.Get "BaseURL" }}/simulations/#{{ $anchor }}'><kbd class="alert-secondary">{{ partial "simulation_icon" }} {{ $sim.title }}</kbd></a>
{{ partial "general-marker" $sim }}
</p></h5>
<!-- Add to the counter -->
Expand Down
1 change: 1 addition & 0 deletions themes/minimal/layouts/partials/structure_icon.html
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◳
4 changes: 2 additions & 2 deletions themes/minimal/layouts/partials/target-entry.html
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Expand Up @@ -19,7 +19,7 @@ <h4 class="anchor" id="{{.context.name | anchorize }}"><b>{{ .context.name }}</b
<!-- tag links to proteins involves in this target -->
<h5 align="left"><b>Proteins affected:</b>
{{ range .context.proteins }}
<a href='{{ index ($localScratch.Get "protein_map") . }}'><kbd class="bg-primary">{{ . }}</kbd></a>
<a href='{{ index ($localScratch.Get "protein_map") . }}'><kbd class="bg-primary">{{ partial "protein_icon" }} {{ . }}</kbd></a>
{{ end }}
</h5>

Expand All @@ -30,7 +30,7 @@ <h5 align="left"><b>Potential therapeutic modalities:</b><!--</h5>
<h5 align="left">-->
{{ range .context.therapeutic_modalities }}
<!-- NOTE: hyperlinks do not correctly link up to the right anchor point yet -->
<a href='{{ index ($localScratch.Get "thera_map") . }}'><kbd class="alert-success">{{ . | title }}</kbd></a>
<a href='{{ index ($localScratch.Get "thera_map") . }}'><kbd class="alert-success">{{ partial "therapeutics_icon" }} {{ . | title }}</kbd></a>
{{ end }}
<!--</h5>-->
</div>
Expand Down
1 change: 1 addition & 0 deletions themes/minimal/layouts/partials/target_icon.html
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🞜
4 changes: 2 additions & 2 deletions themes/minimal/layouts/partials/therapeutics-data.html
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Expand Up @@ -45,7 +45,7 @@ <h5 align="left"><b>Read more about it:</b>
<h5 align="left"><b>Targeting Modalities:</b>

{{ range $localScratch.Get "iter" }}
<a href='{{ (index ($localScratch.Get "target_map") .).link }}'><kbd class="item-tag">{{ . | title}}</kbd></a>
<a href='{{ (index ($localScratch.Get "target_map") .).link }}'><kbd class="item-tag">{{ partial "target_icon" }} {{ . | title}}</kbd></a>
{{ end }}
</h5>
{{ end }}
Expand All @@ -60,7 +60,7 @@ <h5 align="left"><b>Targeting Modalities:</b>
<h5 align="left"><b>Known Protein Interactions:</b>

{{ range $localScratch.Get "iter" }}
<a href='{{ index ($localScratch.Get "protein_map") . }}'><kbd class="bg-primary">{{ . }}</kbd></a>
<a href='{{ index ($localScratch.Get "protein_map") . }}'><kbd class="bg-primary">{{ partial "protein_icon" }} {{ . }}</kbd></a>
{{ end }}
</h5>
{{ end }}
Expand Down
1 change: 1 addition & 0 deletions themes/minimal/layouts/partials/therapeutics_icon.html
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💊
1 change: 1 addition & 0 deletions themes/minimal/layouts/partials/trajectory_icon.html
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↝
2 changes: 1 addition & 1 deletion themes/minimal/layouts/simulations/single.html
100644 → 100755
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Expand Up @@ -95,7 +95,7 @@ <h3 align="left" class="anchor" id="{{ .name | anchorize }}"><b><a href='{{index
{{ end }}

{{ if $localScratch.Get "has_content" }}
<h3 align="left"><u><a style="color:black;" href='{{ $t_map.link }}'>{{$t_map.name}}</a></u></h3>
<h3 align="left"><u><a style="color:black;" href='{{ $t_map.link }}'>{{ partial "target_icon" }} {{$t_map.name}}</a></u></h3>
<!-- Finally Simulations -->
{{ range sort $.Site.Data.simulations "rating" "desc" }}
{{ $protein := $localScratch.Get "protein" }}
Expand Down
2 changes: 1 addition & 1 deletion themes/minimal/layouts/structures/single.html
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Expand Up @@ -94,7 +94,7 @@ <h3 align="left" class="anchor" id="{{ .name | anchorize }}"><b><a href='{{index
{{ end }}
{{ end }}
{{ if $localScratch.Get "has_content" }}
<h3 align="left"><u><a style="color:black;" href='{{ $t_map.link }}'>{{$t_map.name}}</a></u></h3>
<h3 align="left"><u><a style="color:black;" href='{{ $t_map.link }}'>{{ partial "target_icon" }} {{$t_map.name}}</a></u></h3>
<!-- Finally Structures -->
{{ range sort $.Site.Data.structures "rating" "desc" }}
{{ $protein := $localScratch.Get "protein" }}
Expand Down