Changelog

[0.7.1] - 2021-07-26

Fixed

#562 Repeated re-rendering of the Molecule3dViewer component caused the viewer zoom to decrease multiplicatively. This fix also exposes the zoom and zoomTo props for this component.
#565 Fixed major domain annotation positioning for the NeedlePlot component and exposed textangle prop to allow domain annotation text to be angled relative to the horizontal axis.

Changed

#563 Changed package scripts to 3 main build scripts: build:js, build:backends, and build to combined them. This brings the dash-bio build process in-line with the process for other Dash component libraries. As part of this change, __init__.py now also uses relative imports to load components (for more info, see #534).

Added

#564 Added component generation support for Dash Julia.
#565 Added margins and clickData props to NeedlePlot to expose event data for callbacks.

[0.7.0] - 2021-04-19

Fixed

#547 sideByside prop fix for NglMoleculeViewer component when ALL chains are visualized.

Added

#543 Added Dash Pileup component.
#547 Added shapes and isosurfaces props to 3dMoleculeViewer to enable rendering additional features on the molecule.
#553 Added source mapping.
#554 Added additional props and arbitrary layout arguments to VolcanoPlot.

Changed

#550 Updated CONTRIBUTING.md andbasic demo app structure. In addition, removed residual code and pre-deploy scripts associated with now-discontinued Dash Bio gallery.

[0.6.1] - 2021-02-15

Fixed

#544 Miscellaneous fixes for NglMoleculeViewer component.

[0.6.0] - 2021-01-28

Added

#537 Added Dash-IGV component.

[0.5.1] - 2020-12-27

Fixed

#536 Fixed abandoned resource vulnerability with CircosJS fork.

[0.5.0] - 2020-10-05

Added

#496 Added Dash-NGL-Moleculeviewer component.

Fixed

#512 Fixed bug involving clustergrams not being visible in dendograms.

[0.4.8] - 2020-03-16

Changed

#489 Renamed async modules with hyphen - instead of tilde ~
#494 Update from React 16.8.6 to 16.13.0

Added

#492 Added working support of labels in Clustergram.

[0.4.7] - 2020-02-21

Added

#478 Added support of DataFrame as Clustergram input.

[0.4.6] - 2020-01-07

Fixed

#458 Fixed reordering bug of row and column indices following clustering in Clustergram component.

[0.4.5] - 2019-11-26

#452 Fix issue finding CDN resources when using serve_locally=False

[0.4.4] - 2019-11-21

Fixed

#423 Fixed internal method call in Clustergram component.

[0.4.3] - 2019-11-18

Changed

#438 Updated FornaContainer dependency to a version without extraneous console.log calls.

[0.4.2] - 2019-11-15

Fixed

#437 Fix IE11 compatibility issues and ES5 compatibility and validation

[0.4.1] - 2019-11-08

Fixed

#434 Fixed FornaContainer selector issue, in which FornaContainer styles were being applied to all svg elements on the page.

[0.4.0] - 2019-11-05

Added

#430 Async AlignmentChart, Circos, Ideogram, Molecule2dViewer, Molecule3dViewer, NeedlePlot, OncoPrint, SequenceViewwer and Speck components

[0.3.0] - 2019-10-22

Added

Added FornaContainer component for RNA secondary structure analysis.

[0.2.0] - 2019-10-18

Fixed

Fixed AlignmentChart error in which colorscale being undefined caused rendering to fail.
Fixed AlignmentChart PropType for eventDatum to string (which is what gets returned).
Fixed Circos error in which tracks variable being undefined caused rendering to fail.
Fixed Clustergram error in which display_ratio (a float or a list) was used as a list instead of self._display_ratio, which always has the type list.
Fixed Molecule2dViewer error in which modelData being undefined caused rendering to fail.
Fixed Molecule2dViewer PropType for source and target atoms within the links property to also include PropTypes.shape.
Fixed Molecule3dViewer error in which there was no re-rendering upon a change in the selectionType prop.
Fixed SequenceViewer error in which the component initially rendered with coverage that had no defined onClick behavior.

Added

Added re-rendering for Molecule2dViewer and Molecule3dViewer upon the selectedAtomIds prop being updated. (This lets the user write to the selectedAtomIds prop through a Dash component.)
Added re-rendering for SequenceViewer upon the coverageClicked prop being updated.

Removed

Removed AlignmentViewer component (#414)

[0.1.4] - 2019-08-02

Changed

Updated core dependency to dash>=1.0.0.

[0.1.3] - 2019-07-31

Changed

Renamed Clustergram parameters hide_labels and symmetric_value into hidden_labels and center_values respectively.

Fixed

Fixed issue with Molecule2dViewer not displaying triple bonds.

[0.1.2] - 2019-07-13

Changed

Made Speck component compatible with refactored Speck library.
Optimized Speck component further to increase performance.

Added

Added default props to Molecule3dViewer component.
Added zoom/pan and export SVG capabilities to Circos.

[0.1.1] - 2019-06-06

Added

Added Molecule2dViewer component.

Changed

Refactored Speck component and implemented general bug fixes.

Fixed

Fixed issue with Speck not responding to preset changes.

[0.1.0] - 2019-05-27

Removed

Removed all parsing tools in dash_bio.utils to a separate package, dash_bio_utils.

[0.0.11] - 2019-05-09

Added

Added to xyz_reader the ability to handle whitespace at the beginning and end of a line (in data file).
Added a working link to the JS distribution, so serving scripts locally is no longer necessary.

[0.0.10] - 2019-04-30

Fixed

Fixed homepage link in package metadata.

[0.0.9] - 2019-04-29

Fixed

Fixed issue with Clustergram rows and columns reordering incorrectly on the heatmap when precomputed traces are used to generate the figure.
Fixed issue with Speck not rendering unless it is attached to a callback.
Prevented Speck from trying to calculate a system with no atom.
Let Clustergram render even when row and column labels are not specified, by adding default values.
Allowed multiple SequenceViewer components to render on the same application.

Changed

Changed Clustergram to only return a figure by default, so that values no longer need to be unpacked.
Changed Molecule3dViewer's selectionType prop to accept all- lowercase values.

Added

Added to Clustergram the ability to generate a "curve dictionary" to translate curve number (available in hoverData/clickData) to the row or column cluster it represents on the graph.

[0.0.8] - 2019-01-04

Fixed

Fixed issue with Clustergram not reordering rows and columns after clustering.

Removed

Removed mentions of Dash events in OncoPrint component.
Removed properties which weren't used in Ideogram component.

Changed

Changed property fullChromosomeLabels so that it can be updated using dash callbacks.
Changed Imputer (deprecated) to SimpleImputer in Clustergram component.
Changed property name impute_function to imputer_parameters in Clustergram component.
Changed install requirement to Dash version 0.40.0 or greater.

Added

Added ability to define custom colors in style parser for Molecule3D.

[0.0.7] - 2019-26-02

Changed

Changed unicode right arrow to greater-than sign in Circos for compatibility with Python 2.7.

[0.0.6] - 2019-22-02

Added

Added requirements from files in utils, as well as from pure-Python components, to setup install requirements.
Added more descriptive prop descriptions for Dash Ideogram.

[0.0.5] - 2019-15-02

Changed

Changed filenames in dash_bio/utils/ folder to be snake case instead of camel case.

[0.0.4] - 2019-11-02

Added

Added recent update to Speck library to fix jumpy behavior on click-and-drag.

[0.0.3] - 2019-06-02

Added

Added variables to define strings used in _volcano.py graph labels.

[0.0.2] - 2019-05-02

Fixed

Fixed incompatibility issues with Dash 0.36.0.

Removed

Removed all mentions of fireEvent and anything else that used Dash events (which have been removed).