From 06cfc171235df5f534e570a5766d2d11db5cafa7 Mon Sep 17 00:00:00 2001
From: Jody Phelan <jody.phelan@lshtm.ac.uk>
Date: Mon, 29 Apr 2024 18:45:28 +0100
Subject: [PATCH] update testing

---
 .github/workflows/testing.yml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/testing.yml b/.github/workflows/testing.yml
index 3f301e2..29db3f2 100644
--- a/.github/workflows/testing.yml
+++ b/.github/workflows/testing.yml
@@ -28,11 +28,14 @@ jobs:
 
     - name: install dependancies
       run: |
-        mamba create -n test tb-profiler -y
+        wget https://raw.githubusercontent.com/jodyphelan/TBProfiler/dev/conda/linux-latest.txt
+        conda create --name test --file linux-latest.txt
+      
         
     - name: Install dependencies
       run: |
         conda activate test
+        pip install --force-reinstall git+https://github.com/jodyphelan/pathogen-profiler.git@dev
         pip install --force-reinstall .
     - name: Run tests
       run: |