From a7dc0821d5c93d07ea8be9af282d30432f06a1b1 Mon Sep 17 00:00:00 2001 From: Xaver K Date: Tue, 6 Oct 2020 16:37:51 +0200 Subject: [PATCH] Fixed memory leak in lsWriteVisualizationMesh and prepared release 1.3.0. --- CMakeLists.txt | 2 +- Examples/CMakeLists.txt | 6 + Wrapping/pyWrap.cpp | 26 + cmake/ViennaLSConfig.cmake.in | 2 +- .../html/AirGapDeposition_8cpp-example.html | 191 ++++++- docs/doxygen/html/AirGapDeposition_8cpp.html | 21 +- .../html/AirGapDeposition_8py-example.html | 104 +++- docs/doxygen/html/AirGapDeposition_8py.html | 18 +- docs/doxygen/html/CONTRIBUTING_8md.html | 18 +- .../doxygen/html/Deposition_8cpp-example.html | 184 ++++++- docs/doxygen/html/Deposition_8cpp.html | 21 +- docs/doxygen/html/Deposition_8py-example.html | 100 +++- docs/doxygen/html/Deposition_8py.html | 18 +- .../html/GeometricAdvection_8cpp-example.html | 135 ++++- .../doxygen/html/GeometricAdvection_8cpp.html | 21 +- .../html/GeometricAdvection_8py-example.html | 68 ++- 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| 2 + 450 files changed, 7406 insertions(+), 3419 deletions(-) rename docs/doxygen/html/{files.js => files_dup.js} (95%) rename docs/doxygen/html/{functions_func_0x7e.html => functions_func_~.html} (81%) rename docs/doxygen/html/{functions_0x7e.html => functions_~.html} (82%) create mode 100644 docs/doxygen/html/lsWriteVisualizationMesh_8hpp.html rename docs/doxygen/html/{namespaces.js => namespaces_dup.js} (65%) diff --git a/CMakeLists.txt b/CMakeLists.txt index ab76e946..3d0b6f5b 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -2,7 +2,7 @@ cmake_minimum_required(VERSION 3.4) project( "ViennaLS" - VERSION 1.2.0) + VERSION 1.3.0) add_definitions(-DVIENNALS_VERSION=${PROJECT_VERSION}) diff --git a/Examples/CMakeLists.txt b/Examples/CMakeLists.txt index 9e864b50..7f415075 100644 --- a/Examples/CMakeLists.txt +++ b/Examples/CMakeLists.txt @@ -2,6 +2,12 @@ cmake_minimum_required(VERSION 3.4) project(ViennaLSExamples) +## Enable Clang sanitizer for debug builds +if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang") + set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -fno-omit-frame-pointer -fsanitize=address" CACHE STRING "") + set(CMAKE_EXE_LINKER_FLAGS_DEBUG "${CMAKE_EXE_LINKER_FLAGS_DEBUGS} -fno-omit-frame-pointer -fsanitize=address" CACHE STRING "") +endif() + MACRO(SUBDIRLIST result curdir) FILE(GLOB children RELATIVE ${curdir} ${curdir}/*) SET(dirlist "") diff --git a/Wrapping/pyWrap.cpp b/Wrapping/pyWrap.cpp index 64edbe9a..23393490 100644 --- a/Wrapping/pyWrap.cpp +++ b/Wrapping/pyWrap.cpp @@ -46,6 +46,7 @@ #include #include #include +#include #include // always use double for python export @@ -829,4 +830,29 @@ PYBIND11_MODULE(VIENNALS_MODULE_NAME, module) { .def("setFileName", &lsWriter::setFileName, "Set the filename for the output file.") .def("apply", &lsWriter::apply, "Write to file."); + + // lsWriteVisualizationMesh + pybind11::class_, + lsSmartPointer>>( + module, "lsWriteVisualizationMesh") + // constructors + .def(pybind11::init( + &lsSmartPointer>::New<>)) + .def(pybind11::init(&lsSmartPointer>::New< + lsSmartPointer> &>)) + // methods + .def("insertNextLevelSet", + &lsWriteVisualizationMesh::insertNextLevelSet, + "Insert next level set to convert. Bigger level sets wrapping " + "smaller ones, should be inserted last.") + .def("setFileName", &lsWriteVisualizationMesh::setFileName, + "Set Name of File to write.") + .def("setExtractHullMesh", + &lsWriteVisualizationMesh::setExtractHullMesh, + "Whether to extract a hull mesh. Defaults to false.") + .def("setExtractVolumeMesh", + &lsWriteVisualizationMesh::setExtractVolumeMesh, + " Whether to extract a tetra volume mesh. Defaults to true.") + .def("apply", &lsWriteVisualizationMesh::apply, + "Make and write mesh."); } diff --git a/cmake/ViennaLSConfig.cmake.in b/cmake/ViennaLSConfig.cmake.in index 0a2ba1b2..79126ca6 100644 --- a/cmake/ViennaLSConfig.cmake.in +++ b/cmake/ViennaLSConfig.cmake.in @@ -35,7 +35,7 @@ if(@VIENNALS_USE_VTK@) endif(NOT VTK_DIR) find_package(VTK QUIET) if(VTK_FOUND) - message(STATUS "Found VTK") + #message(STATUS "Found VTK") add_compile_definitions(VIENNALS_USE_VTK) include(${VTK_USE_FILE}) # only link needed vtk libraries for static builds diff --git a/docs/doxygen/html/AirGapDeposition_8cpp-example.html b/docs/doxygen/html/AirGapDeposition_8cpp-example.html index 743bd198..b2da5270 100644 --- a/docs/doxygen/html/AirGapDeposition_8cpp-example.html +++ b/docs/doxygen/html/AirGapDeposition_8cpp-example.html @@ -1,9 +1,9 @@ - + - + ViennaLS: AirGapDeposition.cpp @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
@@ -62,7 +66,9 @@
@@ -85,14 +91,185 @@

2D Example showing how to use the library for topography simulation, by creating a trench geometry. A layer of a different material is then grown directionally on top.

-
#include <iostream>
#include <lsAdvect.hpp>
#include <lsBooleanOperation.hpp>
#include <lsDomain.hpp>
#include <lsExpand.hpp>
#include <lsMakeGeometry.hpp>
#include <lsPrune.hpp>
#include <lsToMesh.hpp>
#include <lsToSurfaceMesh.hpp>
#include <lsVTKWriter.hpp>
// implement own velocity field
class velocityField : public lsVelocityField<double> {
public:
double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
int /*material*/,
const std::array<double, 3> &normalVector) {
// velocity is proportional to the normal vector
double velocity = std::abs(normalVector[0]) + std::abs(normalVector[1]);
return velocity;
}
std::array<double, 3>
getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
int /*material*/,
const std::array<double, 3> & /*normalVector*/) {
return std::array<double, 3>({});
}
};
int main() {
constexpr int D = 2;
omp_set_num_threads(2);
double extent = 30;
double gridDelta = 0.5;
double bounds[2 * D] = {-extent, extent, -extent, extent};
lsDomain<double, D>::BoundaryType boundaryCons[D];
boundaryCons[0] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
boundaryCons[1] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
auto substrate =
lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
double origin[2] = {0., 0.};
double planeNormal[2] = {0., 1.};
{
auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
lsMakeGeometry<double, D>(substrate, plane).apply();
}
{
std::cout << "Extracting..." << std::endl;
auto mesh = lsSmartPointer<lsMesh>::New();
lsToSurfaceMesh<double, D>(substrate, mesh).apply();
lsVTKWriter(mesh, "plane.vtk").apply();
}
{
// create layer used for booling
std::cout << "Creating box..." << std::endl;
auto trench = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
gridDelta);
double minCorner[D] = {-extent / 6., -25.};
double maxCorner[D] = {extent / 6., 1.};
auto box = lsSmartPointer<lsBox<double, D>>::New(minCorner, maxCorner);
lsMakeGeometry<double, D>(trench, box).apply();
{
std::cout << "Extracting..." << std::endl;
auto mesh = lsSmartPointer<lsMesh>::New();
lsToMesh<double, D>(trench, mesh).apply();
lsVTKWriter(mesh, "box.vtk").apply();
}
// Create trench geometry
std::cout << "Booling trench..." << std::endl;
lsBooleanOperation<double, D>(substrate, trench,
lsBooleanOperationEnum::RELATIVE_COMPLEMENT)
.apply();
}
// Now grow new material
// create new levelset for new material, which will be grown
// since it has to wrap around the substrate, just copy it
std::cout << "Creating new layer..." << std::endl;
auto newLayer = lsSmartPointer<lsDomain<double, D>>::New(substrate);
auto velocities = lsSmartPointer<velocityField>::New();
std::cout << "Advecting" << std::endl;
lsAdvect<double, D> advectionKernel;
// the level set to be advected has to be inserted last
// the other could be taken as a mask layer for advection
advectionKernel.insertNextLevelSet(substrate);
advectionKernel.insertNextLevelSet(newLayer);
advectionKernel.setVelocityField(velocities);
advectionKernel.setIgnoreVoids(true);
// Now advect the level set 50 times, outputting every
// advection step. Save the physical time that
// passed during the advection.
double passedTime = 0.;
unsigned numberOfSteps = 60;
for (unsigned i = 0; i < numberOfSteps; ++i) {
advectionKernel.apply();
passedTime += advectionKernel.getAdvectedTime();
std::cout << "\rAdvection step " + std::to_string(i) + " / "
<< numberOfSteps << std::flush;
auto mesh = lsSmartPointer<lsMesh>::New();
lsToSurfaceMesh<double, D>(newLayer, mesh).apply();
lsVTKWriter(mesh, "trench" + std::to_string(i) + ".vtk").apply();
}
std::cout << std::endl;
std::cout << "Time passed during advection: " << passedTime << std::endl;
return 0;
}
+
#include <iostream>
+
+
#include <lsAdvect.hpp>
+
#include <lsBooleanOperation.hpp>
+
#include <lsDomain.hpp>
+
#include <lsExpand.hpp>
+
#include <lsMakeGeometry.hpp>
+
#include <lsPrune.hpp>
+
#include <lsToMesh.hpp>
+
#include <lsToSurfaceMesh.hpp>
+
#include <lsVTKWriter.hpp>
+
+
// implement own velocity field
+
class velocityField : public lsVelocityField<double> {
+
public:
+
double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
+
int /*material*/,
+
const std::array<double, 3> &normalVector) {
+
// velocity is proportional to the normal vector
+
double velocity = std::abs(normalVector[0]) + std::abs(normalVector[1]);
+
return velocity;
+
}
+
+
std::array<double, 3>
+
getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
+
int /*material*/,
+
const std::array<double, 3> & /*normalVector*/) {
+
return std::array<double, 3>({});
+
}
+
};
+
+
int main() {
+
+
constexpr int D = 2;
+
omp_set_num_threads(2);
+
+
double extent = 30;
+
double gridDelta = 0.5;
+
+
double bounds[2 * D] = {-extent, extent, -extent, extent};
+
lsDomain<double, D>::BoundaryType boundaryCons[D];
+
boundaryCons[0] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
+
boundaryCons[1] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
+
+
auto substrate =
+
lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
+
+
double origin[2] = {0., 0.};
+
double planeNormal[2] = {0., 1.};
+
+
{
+
auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
+
lsMakeGeometry<double, D>(substrate, plane).apply();
+
}
+
+
{
+
std::cout << "Extracting..." << std::endl;
+
auto mesh = lsSmartPointer<lsMesh>::New();
+
lsToSurfaceMesh<double, D>(substrate, mesh).apply();
+
lsVTKWriter(mesh, "plane.vtk").apply();
+
}
+
+
{
+
// create layer used for booling
+
std::cout << "Creating box..." << std::endl;
+
auto trench = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
+
gridDelta);
+
double minCorner[D] = {-extent / 6., -25.};
+
double maxCorner[D] = {extent / 6., 1.};
+
auto box = lsSmartPointer<lsBox<double, D>>::New(minCorner, maxCorner);
+
lsMakeGeometry<double, D>(trench, box).apply();
+
+
{
+
std::cout << "Extracting..." << std::endl;
+
auto mesh = lsSmartPointer<lsMesh>::New();
+
lsToMesh<double, D>(trench, mesh).apply();
+
lsVTKWriter(mesh, "box.vtk").apply();
+
}
+
+
// Create trench geometry
+
std::cout << "Booling trench..." << std::endl;
+
lsBooleanOperation<double, D>(substrate, trench,
+
lsBooleanOperationEnum::RELATIVE_COMPLEMENT)
+
.apply();
+
}
+
+
// Now grow new material
+
+
// create new levelset for new material, which will be grown
+
// since it has to wrap around the substrate, just copy it
+
std::cout << "Creating new layer..." << std::endl;
+
auto newLayer = lsSmartPointer<lsDomain<double, D>>::New(substrate);
+
+
auto velocities = lsSmartPointer<velocityField>::New();
+
+
std::cout << "Advecting" << std::endl;
+
lsAdvect<double, D> advectionKernel;
+
+
// the level set to be advected has to be inserted last
+
// the other could be taken as a mask layer for advection
+
advectionKernel.insertNextLevelSet(substrate);
+
advectionKernel.insertNextLevelSet(newLayer);
+
+
advectionKernel.setVelocityField(velocities);
+
advectionKernel.setIgnoreVoids(true);
+
+
// Now advect the level set 50 times, outputting every
+
// advection step. Save the physical time that
+
// passed during the advection.
+
double passedTime = 0.;
+
unsigned numberOfSteps = 60;
+
for (unsigned i = 0; i < numberOfSteps; ++i) {
+
advectionKernel.apply();
+
passedTime += advectionKernel.getAdvectedTime();
+
+
std::cout << "\rAdvection step " + std::to_string(i) + " / "
+
<< numberOfSteps << std::flush;
+
auto mesh = lsSmartPointer<lsMesh>::New();
+
lsToSurfaceMesh<double, D>(newLayer, mesh).apply();
+
lsVTKWriter(mesh, "trench" + std::to_string(i) + ".vtk").apply();
+
}
+
std::cout << std::endl;
+
std::cout << "Time passed during advection: " << passedTime << std::endl;
+
+
return 0;
+
}
+
+
AirGapDeposition.minCorner
tuple minCorner
Definition: AirGapDeposition.py:41
+
lsMakeGeometry::apply
void apply()
Definition: lsMakeGeometry.hpp:103
+ + +
AirGapDeposition.trench
trench
Definition: AirGapDeposition.py:40
+
AirGapDeposition.gridDelta
float gridDelta
Definition: AirGapDeposition.py:19
+
lsDomain::BoundaryType
GridType::boundaryType BoundaryType
Definition: lsDomain.hpp:25
+
AirGapDeposition.passedTime
int passedTime
Definition: AirGapDeposition.py:76
+ +
AirGapDeposition.extent
int extent
Definition: AirGapDeposition.py:18
+ +
AirGapDeposition.numberOfSteps
int numberOfSteps
Definition: AirGapDeposition.py:77
+
AirGapDeposition.mesh
mesh
Definition: AirGapDeposition.py:34
+
lsVTKWriter
Class handling the output of an lsMesh to VTK file types.
Definition: lsVTKWriter.hpp:25
+
lsVTKWriter::apply
void apply()
Definition: lsVTKWriter.hpp:52
+
lsBooleanOperation
This class is used to perform boolean operations on two level sets and write the resulting level set ...
Definition: lsBooleanOperation.hpp:36
+ +
lsDomain
Class containing all information about the level set, including the dimensions of the domain,...
Definition: lsDomain.hpp:19
+
lsMakeGeometry
Create level sets describing basic geometric forms.
Definition: lsMakeGeometry.hpp:19
+
lsVelocityField::getScalarVelocity
virtual T getScalarVelocity(const std::array< T, 3 > &, int, const std::array< T, 3 > &)
Should return a scalar value for the velocity at coordinate for a point of material with the given no...
Definition: lsVelocityField.hpp:14
+
main
int main()
Definition: AirGapDeposition.cpp:38
+
lsVelocityField
Abstract class defining the interface for the velocity field used during advection using lsAdvect.
Definition: lsVelocityField.hpp:8
+
AirGapDeposition.advectionKernel
advectionKernel
Definition: AirGapDeposition.py:63
+
lsSmartPointer::New
static lsSmartPointer New(TArgs &&... targs)
Use this function to create new objects when using ViennaLS.
Definition: lsSmartPointer.hpp:21
+
lsToMesh::apply
void apply()
Definition: lsToMesh.hpp:46
+
AirGapDeposition.newLayer
newLayer
Definition: AirGapDeposition.py:58
+
AirGapDeposition.bounds
tuple bounds
Definition: AirGapDeposition.py:21
+
lsToSurfaceMesh
Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit sur...
Definition: lsToSurfaceMesh.hpp:18
+
lsToMesh
Extract the regular grid, on which the level set values are defined, to an explicit lsMesh....
Definition: lsToMesh.hpp:16
+
AirGapDeposition.planeNormal
tuple planeNormal
Definition: AirGapDeposition.py:29
+
lsBooleanOperation::apply
void apply()
perform operation
Definition: lsBooleanOperation.hpp:199
+
AirGapDeposition.maxCorner
tuple maxCorner
Definition: AirGapDeposition.py:42
+ + +
AirGapDeposition.origin
tuple origin
Definition: AirGapDeposition.py:28
+ +
AirGapDeposition.velocities
velocities
Definition: AirGapDeposition.py:60
+
lsToSurfaceMesh::apply
void apply()
Definition: lsToSurfaceMesh.hpp:39
+
lsAdvect
This class is used to advance level sets over time. Level sets are passed to the constructor in an st...
Definition: lsAdvect.hpp:54
+
lsSmartPointer
std::shared_ptr wrapper for use with ViennaLS. lsSmartPointers should be created using the function :...
Definition: lsSmartPointer.hpp:9
+
AirGapDeposition.substrate
substrate
Definition: AirGapDeposition.py:25
+
lsVelocityField::getVectorVelocity
virtual std::array< T, 3 > getVectorVelocity(const std::array< T, 3 > &, int, const std::array< T, 3 > &)
Like getScalarVelocity, but returns a velocity value for each cartesian direction.
Definition: lsVelocityField.hpp:23
+
AirGapDeposition.boundaryCons
tuple boundaryCons
Definition: AirGapDeposition.py:22
+ + diff --git a/docs/doxygen/html/AirGapDeposition_8cpp.html b/docs/doxygen/html/AirGapDeposition_8cpp.html index 009dd3ea..e8af1662 100644 --- a/docs/doxygen/html/AirGapDeposition_8cpp.html +++ b/docs/doxygen/html/AirGapDeposition_8cpp.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/AirGapDeposition/AirGapDeposition.cpp File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
@@ -62,7 +66,9 @@
@@ -117,8 +123,9 @@

-
Examples:
AirGapDeposition.cpp.
+
Examples
AirGapDeposition.cpp.
+

@@ -129,7 +136,7 @@

Examples
  • AirGapDeposition
  • AirGapDeposition.cpp
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/AirGapDeposition_8py-example.html b/docs/doxygen/html/AirGapDeposition_8py-example.html index d89e5576..7dc85d90 100644 --- a/docs/doxygen/html/AirGapDeposition_8py-example.html +++ b/docs/doxygen/html/AirGapDeposition_8py-example.html @@ -1,9 +1,9 @@ - + - + ViennaLS: AirGapDeposition.py @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -85,14 +91,98 @@

    Example showing how to use the library for topography simulation, by creating a trench geometry. A layer of a different material is then grown directionally on top.

    -
    1 import viennaLS2d as vls
    2 
    3 
    7 
    8 class velocityField(vls.lsVelocityField):
    9  # coord and normalVec are lists with 3 elements
    10  # in 2D coord[2] and normalVec[2] are zero
    11  # getScalarVelocity must return a scalar
    12  def getScalarVelocity(self, coord, material, normal):
    13  return abs(normal[0]) + abs(normal[1])
    14 
    15  def getVectorVelocity(self, coord, material, normal):
    16  return (0,0,0)
    17 
    18 extent = 30
    19 gridDelta = 0.5
    20 
    21 bounds = (-extent, extent, -extent, extent)
    22 boundaryCons = (0, 1, 0) # 0 = reflective, 1 = infinite, 2 = periodic
    23 
    24 # create level set
    25 substrate = vls.lsDomain(bounds, boundaryCons, gridDelta)
    26 
    27 # create plane
    28 origin = (0,0,0)
    29 planeNormal = (0,1,0)
    30 
    31 vls.lsMakeGeometry(substrate, vls.lsPlane(origin, planeNormal)).apply()
    32 
    33 print("Extracting")
    34 mesh = vls.lsMesh()
    35 vls.lsToSurfaceMesh(substrate, mesh).apply()
    36 vls.lsVTKWriter(mesh, "plane.vtk").apply()
    37 
    38 # create layer used for booling
    39 print("Creating box...")
    40 trench = vls.lsDomain(bounds, boundaryCons, gridDelta)
    41 minCorner = (-extent / 6., -25.)
    42 maxCorner = (extent / 6., 1.)
    43 vls.lsMakeGeometry(trench, vls.lsBox(minCorner, maxCorner)).apply()
    44 
    45 print("Extracting")
    46 vls.lsToMesh(trench, mesh).apply()
    47 vls.lsVTKWriter(mesh, "box.vtk").apply()
    48 
    49 # Create trench geometry
    50 print("Booling trench")
    51 vls.lsBooleanOperation(substrate, trench, vls.lsBooleanOperationEnum.RELATIVE_COMPLEMENT).apply()
    52 
    53 # Now grow new material
    54 
    55 # create new levelset for new material, which will be grown
    56 # since it has to wrap around the substrate, just copy it
    57 print("Creating new layer...")
    58 newLayer = vls.lsDomain(substrate)
    59 
    60 velocities = velocityField()
    61 
    62 print("Advecting")
    63 advectionKernel = vls.lsAdvect()
    64 
    65 # the level set to be advected has to be inserted last
    66 # the other could be taken as a mask layer for advection
    67 advectionKernel.insertNextLevelSet(substrate)
    68 advectionKernel.insertNextLevelSet(newLayer)
    69 
    70 advectionKernel.setVelocityField(velocities)
    71 advectionKernel.setIgnoreVoids(True)
    72 
    73 # Now advect the level set 50 times, outputting every
    74 # advection step. Save the physical time that
    75 # passed during the advection.
    76 passedTime = 0
    77 numberOfSteps = 60
    78 for i in range(numberOfSteps):
    79  advectionKernel.apply()
    80  passedTime += advectionKernel.getAdvectedTime()
    81 
    82  print("Advection step {} / {}".format(i, numberOfSteps))
    83 
    84  vls.lsToSurfaceMesh(newLayer, mesh).apply()
    85  vls.lsVTKWriter(mesh, "trench{}.vtk".format(i)).apply()
    86 
    87 print("Time passed during advection: {}".format(passedTime))
    +
    1 import viennaLS2d as vls
    +
    2 
    +
    3 
    +
    7 
    +
    8 class velocityField(vls.lsVelocityField):
    +
    9  # coord and normalVec are lists with 3 elements
    +
    10  # in 2D coord[2] and normalVec[2] are zero
    +
    11  # getScalarVelocity must return a scalar
    +
    12  def getScalarVelocity(self, coord, material, normal):
    +
    13  return abs(normal[0]) + abs(normal[1])
    +
    14 
    +
    15  def getVectorVelocity(self, coord, material, normal):
    +
    16  return (0,0,0)
    +
    17 
    +
    18 extent = 30
    +
    19 gridDelta = 0.5
    +
    20 
    +
    21 bounds = (-extent, extent, -extent, extent)
    +
    22 boundaryCons = (0, 1, 0) # 0 = reflective, 1 = infinite, 2 = periodic
    +
    23 
    +
    24 # create level set
    +
    25 substrate = vls.lsDomain(bounds, boundaryCons, gridDelta)
    +
    26 
    +
    27 # create plane
    +
    28 origin = (0,0,0)
    +
    29 planeNormal = (0,1,0)
    +
    30 
    +
    31 vls.lsMakeGeometry(substrate, vls.lsPlane(origin, planeNormal)).apply()
    +
    32 
    +
    33 print("Extracting")
    +
    34 mesh = vls.lsMesh()
    +
    35 vls.lsToSurfaceMesh(substrate, mesh).apply()
    +
    36 vls.lsVTKWriter(mesh, "plane.vtk").apply()
    +
    37 
    +
    38 # create layer used for booling
    +
    39 print("Creating box...")
    +
    40 trench = vls.lsDomain(bounds, boundaryCons, gridDelta)
    +
    41 minCorner = (-extent / 6., -25.)
    +
    42 maxCorner = (extent / 6., 1.)
    +
    43 vls.lsMakeGeometry(trench, vls.lsBox(minCorner, maxCorner)).apply()
    +
    44 
    +
    45 print("Extracting")
    +
    46 vls.lsToMesh(trench, mesh).apply()
    +
    47 vls.lsVTKWriter(mesh, "box.vtk").apply()
    +
    48 
    +
    49 # Create trench geometry
    +
    50 print("Booling trench")
    +
    51 vls.lsBooleanOperation(substrate, trench, vls.lsBooleanOperationEnum.RELATIVE_COMPLEMENT).apply()
    +
    52 
    +
    53 # Now grow new material
    +
    54 
    +
    55 # create new levelset for new material, which will be grown
    +
    56 # since it has to wrap around the substrate, just copy it
    +
    57 print("Creating new layer...")
    +
    58 newLayer = vls.lsDomain(substrate)
    +
    59 
    +
    60 velocities = velocityField()
    +
    61 
    +
    62 print("Advecting")
    +
    63 advectionKernel = vls.lsAdvect()
    +
    64 
    +
    65 # the level set to be advected has to be inserted last
    +
    66 # the other could be taken as a mask layer for advection
    +
    67 advectionKernel.insertNextLevelSet(substrate)
    +
    68 advectionKernel.insertNextLevelSet(newLayer)
    +
    69 
    +
    70 advectionKernel.setVelocityField(velocities)
    +
    71 advectionKernel.setIgnoreVoids(True)
    +
    72 
    +
    73 # Now advect the level set 50 times, outputting every
    +
    74 # advection step. Save the physical time that
    +
    75 # passed during the advection.
    +
    76 passedTime = 0
    +
    77 numberOfSteps = 60
    +
    78 for i in range(numberOfSteps):
    +
    79  advectionKernel.apply()
    +
    80  passedTime += advectionKernel.getAdvectedTime()
    +
    81 
    +
    82  print("Advection step {} / {}".format(i, numberOfSteps))
    +
    83 
    +
    84  vls.lsToSurfaceMesh(newLayer, mesh).apply()
    +
    85  vls.lsVTKWriter(mesh, "trench{}.vtk".format(i)).apply()
    +
    86 
    +
    87 print("Time passed during advection: {}".format(passedTime))
    +
    diff --git a/docs/doxygen/html/AirGapDeposition_8py.html b/docs/doxygen/html/AirGapDeposition_8py.html index 92c2a562..65bd2172 100644 --- a/docs/doxygen/html/AirGapDeposition_8py.html +++ b/docs/doxygen/html/AirGapDeposition_8py.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/AirGapDeposition/AirGapDeposition.py File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -142,7 +148,7 @@
  • Examples
  • AirGapDeposition
  • AirGapDeposition.py
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/CONTRIBUTING_8md.html b/docs/doxygen/html/CONTRIBUTING_8md.html index b96c0066..a82a335f 100644 --- a/docs/doxygen/html/CONTRIBUTING_8md.html +++ b/docs/doxygen/html/CONTRIBUTING_8md.html @@ -1,9 +1,9 @@ - + - + ViennaLS: CONTRIBUTING.md File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -92,7 +98,7 @@
  • CONTRIBUTING.md
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/Deposition_8cpp-example.html b/docs/doxygen/html/Deposition_8cpp-example.html index 5228438e..cf0a4515 100644 --- a/docs/doxygen/html/Deposition_8cpp-example.html +++ b/docs/doxygen/html/Deposition_8cpp-example.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Deposition.cpp @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -85,14 +91,178 @@

    3D Example showing how to use the library for topography simulation, by creating a trench geometry. A uniform layer of a different material is then grown on top.

    -
    #include <iostream>
    #include <lsAdvect.hpp>
    #include <lsBooleanOperation.hpp>
    #include <lsDomain.hpp>
    #include <lsExpand.hpp>
    #include <lsMakeGeometry.hpp>
    #include <lsPrune.hpp>
    #include <lsToMesh.hpp>
    #include <lsToSurfaceMesh.hpp>
    #include <lsVTKWriter.hpp>
    // implement own velocity field
    class velocityField : public lsVelocityField<double> {
    public:
    double
    getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    int /*material*/,
    const std::array<double, 3>
    & /*normalVector = hrleVectorType<double, 3>(0.)*/) {
    // Some arbitrary velocity function of your liking
    // (try changing it and see what happens :)
    double velocity = 1.;
    return velocity;
    }
    std::array<double, 3>
    getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
    int /*material*/,
    const std::array<double, 3>
    & /*normalVector = hrleVectorType<double, 3>(0.)*/) {
    return std::array<double, 3>({}); // initialise to zero
    }
    };
    int main() {
    constexpr int D = 3;
    omp_set_num_threads(4);
    double extent = 30;
    double gridDelta = 0.5;
    double bounds[2 * D] = {-extent, extent, -extent, extent, -extent, extent};
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    for (unsigned i = 0; i < D - 1; ++i)
    boundaryCons[i] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
    boundaryCons[2] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    auto substrate =
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    double origin[3] = {0., 0., 0.};
    double planeNormal[3] = {0., 0., 1.};
    {
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    lsMakeGeometry<double, D>(substrate, plane).apply();
    }
    {
    auto trench = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
    gridDelta);
    // make -x and +x greater than domain for numerical stability
    double minCorner[D] = {-extent - 1, -extent / 4., -15.};
    double maxCorner[D] = {extent + 1, extent / 4., 1.};
    auto box = lsSmartPointer<lsBox<double, D>>::New(minCorner, maxCorner);
    lsMakeGeometry<double, D>(trench, box).apply();
    // Create trench geometry
    lsBooleanOperation<double, D>(substrate, trench,
    lsBooleanOperationEnum::RELATIVE_COMPLEMENT)
    .apply();
    }
    {
    std::cout << "Extracting..." << std::endl;
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    lsVTKWriter(mesh, "trench-0.vtk").apply();
    }
    // Now grow new material isotropically
    // create new levelset for new material, which will be grown
    // since it has to wrap around the substrate, just copy it
    auto newLayer = lsSmartPointer<lsDomain<double, D>>::New(substrate);
    auto velocities = lsSmartPointer<velocityField>::New();
    std::cout << "Advecting" << std::endl;
    lsAdvect<double, D> advectionKernel;
    // the level set to be advected has to be inserted last
    // the other could be taken as a mask layer for advection
    advectionKernel.insertNextLevelSet(substrate);
    advectionKernel.insertNextLevelSet(newLayer);
    advectionKernel.setVelocityField(velocities);
    // advectionKernel.setAdvectionTime(4.);
    unsigned counter = 1;
    for (double time = 0; time < 4.; time += advectionKernel.getAdvectedTime()) {
    advectionKernel.apply();
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(newLayer, mesh).apply();
    lsVTKWriter(mesh, "trench-" + std::to_string(counter) + ".vtk").apply();
    lsToMesh<double, D>(newLayer, mesh).apply();
    lsVTKWriter(mesh, "LS-" + std::to_string(counter) + ".vtk").apply();
    ++counter;
    }
    // double advectionSteps = advectionKernel.getNumberOfTimeSteps();
    // std::cout << "Number of Advection steps taken: " << advectionSteps
    // << std::endl;
    return 0;
    }
    +
    #include <iostream>
    +
    +
    #include <lsAdvect.hpp>
    +
    #include <lsBooleanOperation.hpp>
    +
    #include <lsDomain.hpp>
    +
    #include <lsExpand.hpp>
    +
    #include <lsMakeGeometry.hpp>
    +
    #include <lsPrune.hpp>
    +
    #include <lsToMesh.hpp>
    +
    #include <lsToSurfaceMesh.hpp>
    +
    #include <lsVTKWriter.hpp>
    +
    +
    // implement own velocity field
    +
    class velocityField : public lsVelocityField<double> {
    +
    public:
    +
    double
    +
    getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int /*material*/,
    +
    const std::array<double, 3>
    +
    & /*normalVector = hrleVectorType<double, 3>(0.)*/) {
    +
    // Some arbitrary velocity function of your liking
    +
    // (try changing it and see what happens :)
    +
    double velocity = 1.;
    +
    return velocity;
    +
    }
    +
    +
    std::array<double, 3>
    +
    getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int /*material*/,
    +
    const std::array<double, 3>
    +
    & /*normalVector = hrleVectorType<double, 3>(0.)*/) {
    +
    return std::array<double, 3>({}); // initialise to zero
    +
    }
    +
    };
    +
    +
    int main() {
    +
    +
    constexpr int D = 3;
    +
    omp_set_num_threads(4);
    +
    +
    double extent = 30;
    +
    double gridDelta = 0.5;
    +
    +
    double bounds[2 * D] = {-extent, extent, -extent, extent, -extent, extent};
    +
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    +
    for (unsigned i = 0; i < D - 1; ++i)
    +
    boundaryCons[i] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
    +
    boundaryCons[2] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    +
    +
    auto substrate =
    +
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    +
    +
    double origin[3] = {0., 0., 0.};
    +
    double planeNormal[3] = {0., 0., 1.};
    +
    +
    {
    +
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    +
    lsMakeGeometry<double, D>(substrate, plane).apply();
    +
    }
    +
    +
    {
    +
    auto trench = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
    +
    gridDelta);
    +
    // make -x and +x greater than domain for numerical stability
    +
    double minCorner[D] = {-extent - 1, -extent / 4., -15.};
    +
    double maxCorner[D] = {extent + 1, extent / 4., 1.};
    +
    auto box = lsSmartPointer<lsBox<double, D>>::New(minCorner, maxCorner);
    +
    lsMakeGeometry<double, D>(trench, box).apply();
    +
    +
    // Create trench geometry
    +
    lsBooleanOperation<double, D>(substrate, trench,
    +
    lsBooleanOperationEnum::RELATIVE_COMPLEMENT)
    +
    .apply();
    +
    }
    +
    +
    {
    +
    std::cout << "Extracting..." << std::endl;
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    +
    lsVTKWriter(mesh, "trench-0.vtk").apply();
    +
    }
    +
    +
    // Now grow new material isotropically
    +
    +
    // create new levelset for new material, which will be grown
    +
    // since it has to wrap around the substrate, just copy it
    +
    auto newLayer = lsSmartPointer<lsDomain<double, D>>::New(substrate);
    +
    +
    auto velocities = lsSmartPointer<velocityField>::New();
    +
    +
    std::cout << "Advecting" << std::endl;
    +
    lsAdvect<double, D> advectionKernel;
    +
    +
    // the level set to be advected has to be inserted last
    +
    // the other could be taken as a mask layer for advection
    +
    advectionKernel.insertNextLevelSet(substrate);
    +
    advectionKernel.insertNextLevelSet(newLayer);
    +
    +
    advectionKernel.setVelocityField(velocities);
    +
    // advectionKernel.setAdvectionTime(4.);
    +
    unsigned counter = 1;
    +
    for (double time = 0; time < 4.; time += advectionKernel.getAdvectedTime()) {
    +
    advectionKernel.apply();
    +
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(newLayer, mesh).apply();
    +
    lsVTKWriter(mesh, "trench-" + std::to_string(counter) + ".vtk").apply();
    +
    +
    lsToMesh<double, D>(newLayer, mesh).apply();
    +
    lsVTKWriter(mesh, "LS-" + std::to_string(counter) + ".vtk").apply();
    +
    +
    ++counter;
    +
    }
    +
    +
    // double advectionSteps = advectionKernel.getNumberOfTimeSteps();
    +
    // std::cout << "Number of Advection steps taken: " << advectionSteps
    +
    // << std::endl;
    +
    +
    return 0;
    +
    }
    +
    +
    AirGapDeposition.minCorner
    tuple minCorner
    Definition: AirGapDeposition.py:41
    +
    Deposition.counter
    int counter
    Definition: Deposition.py:67
    +
    lsMakeGeometry::apply
    void apply()
    Definition: lsMakeGeometry.hpp:103
    + + +
    AirGapDeposition.trench
    trench
    Definition: AirGapDeposition.py:40
    +
    AirGapDeposition.gridDelta
    float gridDelta
    Definition: AirGapDeposition.py:19
    +
    lsDomain::BoundaryType
    GridType::boundaryType BoundaryType
    Definition: lsDomain.hpp:25
    +
    main
    int main()
    Definition: Deposition.cpp:43
    + +
    AirGapDeposition.extent
    int extent
    Definition: AirGapDeposition.py:18
    + +
    AirGapDeposition.mesh
    mesh
    Definition: AirGapDeposition.py:34
    +
    lsVTKWriter
    Class handling the output of an lsMesh to VTK file types.
    Definition: lsVTKWriter.hpp:25
    +
    lsVTKWriter::apply
    void apply()
    Definition: lsVTKWriter.hpp:52
    +
    lsBooleanOperation
    This class is used to perform boolean operations on two level sets and write the resulting level set ...
    Definition: lsBooleanOperation.hpp:36
    + +
    lsDomain
    Class containing all information about the level set, including the dimensions of the domain,...
    Definition: lsDomain.hpp:19
    +
    lsMakeGeometry
    Create level sets describing basic geometric forms.
    Definition: lsMakeGeometry.hpp:19
    +
    lsVelocityField::getScalarVelocity
    virtual T getScalarVelocity(const std::array< T, 3 > &, int, const std::array< T, 3 > &)
    Should return a scalar value for the velocity at coordinate for a point of material with the given no...
    Definition: lsVelocityField.hpp:14
    +
    lsVelocityField
    Abstract class defining the interface for the velocity field used during advection using lsAdvect.
    Definition: lsVelocityField.hpp:8
    +
    AirGapDeposition.advectionKernel
    advectionKernel
    Definition: AirGapDeposition.py:63
    +
    lsSmartPointer::New
    static lsSmartPointer New(TArgs &&... targs)
    Use this function to create new objects when using ViennaLS.
    Definition: lsSmartPointer.hpp:21
    +
    lsToMesh::apply
    void apply()
    Definition: lsToMesh.hpp:46
    +
    AirGapDeposition.newLayer
    newLayer
    Definition: AirGapDeposition.py:58
    +
    AirGapDeposition.bounds
    tuple bounds
    Definition: AirGapDeposition.py:21
    +
    lsToSurfaceMesh
    Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit sur...
    Definition: lsToSurfaceMesh.hpp:18
    +
    lsToMesh
    Extract the regular grid, on which the level set values are defined, to an explicit lsMesh....
    Definition: lsToMesh.hpp:16
    +
    AirGapDeposition.planeNormal
    tuple planeNormal
    Definition: AirGapDeposition.py:29
    +
    lsBooleanOperation::apply
    void apply()
    perform operation
    Definition: lsBooleanOperation.hpp:199
    +
    AirGapDeposition.maxCorner
    tuple maxCorner
    Definition: AirGapDeposition.py:42
    + + +
    AirGapDeposition.origin
    tuple origin
    Definition: AirGapDeposition.py:28
    + +
    AirGapDeposition.velocities
    velocities
    Definition: AirGapDeposition.py:60
    +
    lsToSurfaceMesh::apply
    void apply()
    Definition: lsToSurfaceMesh.hpp:39
    +
    lsAdvect
    This class is used to advance level sets over time. Level sets are passed to the constructor in an st...
    Definition: lsAdvect.hpp:54
    +
    lsSmartPointer
    std::shared_ptr wrapper for use with ViennaLS. lsSmartPointers should be created using the function :...
    Definition: lsSmartPointer.hpp:9
    +
    AirGapDeposition.substrate
    substrate
    Definition: AirGapDeposition.py:25
    +
    lsVelocityField::getVectorVelocity
    virtual std::array< T, 3 > getVectorVelocity(const std::array< T, 3 > &, int, const std::array< T, 3 > &)
    Like getScalarVelocity, but returns a velocity value for each cartesian direction.
    Definition: lsVelocityField.hpp:23
    +
    AirGapDeposition.boundaryCons
    tuple boundaryCons
    Definition: AirGapDeposition.py:22
    + + diff --git a/docs/doxygen/html/Deposition_8cpp.html b/docs/doxygen/html/Deposition_8cpp.html index 4495b5ce..ee8faf10 100644 --- a/docs/doxygen/html/Deposition_8cpp.html +++ b/docs/doxygen/html/Deposition_8cpp.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/Deposition/Deposition.cpp File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -117,8 +123,9 @@

    -
    Examples:
    Deposition.cpp.
    +
    Examples
    Deposition.cpp.
    +

    @@ -129,7 +136,7 @@

    Examples
  • Deposition
  • Deposition.cpp
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/Deposition_8py-example.html b/docs/doxygen/html/Deposition_8py-example.html index f4a03eb8..ca821052 100644 --- a/docs/doxygen/html/Deposition_8py-example.html +++ b/docs/doxygen/html/Deposition_8py-example.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Deposition.py @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -85,14 +91,94 @@

    3D Example showing how to use the library for topography simulation, by creating a trench geometry. A uniform layer of a different material is then grown on top.

    -
    1 import viennaLS3d as vls
    2 
    3 
    7 
    8 class velocityField(vls.lsVelocityField):
    9  # coord and normalVec are lists with 3 elements
    10  # in 2D coord[2] and normalVec[2] are zero
    11  # getScalarVelocity must return a scalar
    12  def getScalarVelocity(self, coord, material, normal):
    13  # some arbitrary velocity function of your liking
    14  # (try changing it and see what happens :)
    15  velocity = 1
    16  return velocity
    17 
    18  def getVectorVelocity(self, coord, material, normal):
    19  return (0,0,0)
    20 
    21 extent = 30
    22 gridDelta = 0.5
    23 
    24 bounds = (-extent, extent, -extent, extent, -extent, extent)
    25 boundaryCons = (0, 0, 1) # 0 = reflective, 1 = infinite, 2 = periodic
    26 
    27 # create level set
    28 substrate = vls.lsDomain(bounds, boundaryCons, gridDelta)
    29 
    30 # create plane
    31 origin = (0,0,0)
    32 planeNormal = (0,0,1)
    33 
    34 vls.lsMakeGeometry(substrate, vls.lsPlane(origin, planeNormal)).apply()
    35 
    36 # create layer used for booling
    37 print("Creating box...")
    38 trench = vls.lsDomain(bounds, boundaryCons, gridDelta)
    39 minCorner = (-extent - 1, -extent / 4., -15.)
    40 maxCorner = (extent + 1, extent / 4., 1.)
    41 vls.lsMakeGeometry(trench, vls.lsBox(minCorner, maxCorner)).apply()
    42 
    43 # Create trench geometry
    44 print("Booling trench")
    45 vls.lsBooleanOperation(substrate, trench, vls.lsBooleanOperationEnum.RELATIVE_COMPLEMENT).apply()
    46 
    47 # Now grow new material
    48 
    49 # create new levelset for new material, which will be grown
    50 # since it has to wrap around the substrate, just copy it
    51 print("Creating new layer...")
    52 newLayer = vls.lsDomain(substrate)
    53 
    54 velocities = velocityField()
    55 
    56 print("Advecting")
    57 advectionKernel = vls.lsAdvect()
    58 
    59 # the level set to be advected has to be inserted last
    60 # the other could be taken as a mask layer for advection
    61 advectionKernel.insertNextLevelSet(substrate)
    62 advectionKernel.insertNextLevelSet(newLayer)
    63 
    64 advectionKernel.setVelocityField(velocities)
    65 
    66 # Advect the level set
    67 counter = 1
    68 passedTime = 0
    69 
    70 mesh = vls.lsMesh()
    71 while(passedTime < 4):
    72  advectionKernel.apply()
    73  passedTime += advectionKernel.getAdvectedTime()
    74 
    75  vls.lsToSurfaceMesh(newLayer, mesh).apply()
    76  vls.lsVTKWriter(mesh, "trench-{}.vtk".format(counter)).apply()
    77 
    78  vls.lsToMesh(newLayer, mesh).apply()
    79  vls.lsVTKWriter(mesh, "LS-{}.vtk".format(counter)).apply()
    80 
    81  counter = counter + 1
    82 
    83 print("Time passed during advection: {}".format(passedTime))
    +
    1 import viennaLS3d as vls
    +
    2 
    +
    3 
    +
    7 
    +
    8 class velocityField(vls.lsVelocityField):
    +
    9  # coord and normalVec are lists with 3 elements
    +
    10  # in 2D coord[2] and normalVec[2] are zero
    +
    11  # getScalarVelocity must return a scalar
    +
    12  def getScalarVelocity(self, coord, material, normal):
    +
    13  # some arbitrary velocity function of your liking
    +
    14  # (try changing it and see what happens :)
    +
    15  velocity = 1
    +
    16  return velocity
    +
    17 
    +
    18  def getVectorVelocity(self, coord, material, normal):
    +
    19  return (0,0,0)
    +
    20 
    +
    21 extent = 30
    +
    22 gridDelta = 0.5
    +
    23 
    +
    24 bounds = (-extent, extent, -extent, extent, -extent, extent)
    +
    25 boundaryCons = (0, 0, 1) # 0 = reflective, 1 = infinite, 2 = periodic
    +
    26 
    +
    27 # create level set
    +
    28 substrate = vls.lsDomain(bounds, boundaryCons, gridDelta)
    +
    29 
    +
    30 # create plane
    +
    31 origin = (0,0,0)
    +
    32 planeNormal = (0,0,1)
    +
    33 
    +
    34 vls.lsMakeGeometry(substrate, vls.lsPlane(origin, planeNormal)).apply()
    +
    35 
    +
    36 # create layer used for booling
    +
    37 print("Creating box...")
    +
    38 trench = vls.lsDomain(bounds, boundaryCons, gridDelta)
    +
    39 minCorner = (-extent - 1, -extent / 4., -15.)
    +
    40 maxCorner = (extent + 1, extent / 4., 1.)
    +
    41 vls.lsMakeGeometry(trench, vls.lsBox(minCorner, maxCorner)).apply()
    +
    42 
    +
    43 # Create trench geometry
    +
    44 print("Booling trench")
    +
    45 vls.lsBooleanOperation(substrate, trench, vls.lsBooleanOperationEnum.RELATIVE_COMPLEMENT).apply()
    +
    46 
    +
    47 # Now grow new material
    +
    48 
    +
    49 # create new levelset for new material, which will be grown
    +
    50 # since it has to wrap around the substrate, just copy it
    +
    51 print("Creating new layer...")
    +
    52 newLayer = vls.lsDomain(substrate)
    +
    53 
    +
    54 velocities = velocityField()
    +
    55 
    +
    56 print("Advecting")
    +
    57 advectionKernel = vls.lsAdvect()
    +
    58 
    +
    59 # the level set to be advected has to be inserted last
    +
    60 # the other could be taken as a mask layer for advection
    +
    61 advectionKernel.insertNextLevelSet(substrate)
    +
    62 advectionKernel.insertNextLevelSet(newLayer)
    +
    63 
    +
    64 advectionKernel.setVelocityField(velocities)
    +
    65 
    +
    66 # Advect the level set
    +
    67 counter = 1
    +
    68 passedTime = 0
    +
    69 
    +
    70 mesh = vls.lsMesh()
    +
    71 while(passedTime < 4):
    +
    72  advectionKernel.apply()
    +
    73  passedTime += advectionKernel.getAdvectedTime()
    +
    74 
    +
    75  vls.lsToSurfaceMesh(newLayer, mesh).apply()
    +
    76  vls.lsVTKWriter(mesh, "trench-{}.vtk".format(counter)).apply()
    +
    77 
    +
    78  vls.lsToMesh(newLayer, mesh).apply()
    +
    79  vls.lsVTKWriter(mesh, "LS-{}.vtk".format(counter)).apply()
    +
    80 
    +
    81  counter = counter + 1
    +
    82 
    +
    83 print("Time passed during advection: {}".format(passedTime))
    +
    diff --git a/docs/doxygen/html/Deposition_8py.html b/docs/doxygen/html/Deposition_8py.html index 26b53ed3..49d7ef44 100644 --- a/docs/doxygen/html/Deposition_8py.html +++ b/docs/doxygen/html/Deposition_8py.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/Deposition/Deposition.py File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -142,7 +148,7 @@
  • Examples
  • Deposition
  • Deposition.py
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/GeometricAdvection_8cpp-example.html b/docs/doxygen/html/GeometricAdvection_8cpp-example.html index 1c5c5fdd..ced13f48 100644 --- a/docs/doxygen/html/GeometricAdvection_8cpp-example.html +++ b/docs/doxygen/html/GeometricAdvection_8cpp-example.html @@ -1,9 +1,9 @@ - + - + ViennaLS: GeometricAdvection.cpp @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -85,14 +91,129 @@

    3D Example showing how to use the library for topography emulation, by creating a trench geometry. A uniform layer of a different material is then grown on top. It is the same example as Deposition but emulates the deposition rather than simulating a slow growth.

    -
    #include <iostream>
    #include <lsBooleanOperation.hpp>
    #include <lsDomain.hpp>
    #include <lsExpand.hpp>
    #include <lsGeometricAdvect.hpp>
    #include <lsMakeGeometry.hpp>
    #include <lsPrune.hpp>
    #include <lsToMesh.hpp>
    #include <lsToSurfaceMesh.hpp>
    #include <lsVTKWriter.hpp>
    int main() {
    constexpr int D = 3;
    omp_set_num_threads(4);
    double extent = 30;
    double gridDelta = 0.5;
    double bounds[2 * D] = {-extent, extent, -extent, extent, -extent, extent};
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    for (unsigned i = 0; i < D - 1; ++i)
    boundaryCons[i] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
    boundaryCons[2] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    auto substrate =
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    {
    double origin[3] = {0., 0., 0.};
    double planeNormal[3] = {0., 0., 1.};
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    lsMakeGeometry<double, D>(substrate, plane).apply();
    }
    {
    auto trench = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
    gridDelta);
    // make -x and +x greater than domain for numerical stability
    double minCorner[D] = {-extent - 1, -extent / 4., -15.};
    double maxCorner[D] = {extent + 1, extent / 4., 1.};
    auto box = lsSmartPointer<lsBox<double, D>>::New(minCorner, maxCorner);
    lsMakeGeometry<double, D>(trench, box).apply();
    // Create trench geometry
    lsBooleanOperation<double, D>(substrate, trench,
    lsBooleanOperationEnum::RELATIVE_COMPLEMENT)
    .apply();
    }
    {
    std::cout << "Extracting..." << std::endl;
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    lsVTKWriter(mesh, "trench-0.vtk").apply();
    }
    // Now grow new material isotropically
    // create new levelset for new material, which will be grown
    // since it has to wrap around the substrate, just copy it
    auto newLayer = lsSmartPointer<lsDomain<double, D>>::New(substrate);
    std::cout << "Advecting" << std::endl;
    // Grow the layer uniformly by 4 as in deposition example
    auto dist =
    lsSmartPointer<lsSphereDistribution<double, D>>::New(4.0, gridDelta);
    lsGeometricAdvect<double, D>(newLayer, dist).apply();
    {
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(newLayer, mesh).apply();
    lsVTKWriter(mesh, "trench-final.vtk").apply();
    }
    return 0;
    }
    +
    #include <iostream>
    +
    +
    #include <lsBooleanOperation.hpp>
    +
    #include <lsDomain.hpp>
    +
    #include <lsExpand.hpp>
    +
    #include <lsGeometricAdvect.hpp>
    +
    #include <lsMakeGeometry.hpp>
    +
    #include <lsPrune.hpp>
    +
    #include <lsToMesh.hpp>
    +
    #include <lsToSurfaceMesh.hpp>
    +
    #include <lsVTKWriter.hpp>
    +
    +
    int main() {
    +
    +
    constexpr int D = 3;
    +
    omp_set_num_threads(4);
    +
    +
    double extent = 30;
    +
    double gridDelta = 0.5;
    +
    +
    double bounds[2 * D] = {-extent, extent, -extent, extent, -extent, extent};
    +
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    +
    for (unsigned i = 0; i < D - 1; ++i)
    +
    boundaryCons[i] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
    +
    boundaryCons[2] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    +
    +
    auto substrate =
    +
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    +
    +
    {
    +
    double origin[3] = {0., 0., 0.};
    +
    double planeNormal[3] = {0., 0., 1.};
    +
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    +
    lsMakeGeometry<double, D>(substrate, plane).apply();
    +
    }
    +
    +
    {
    +
    auto trench = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
    +
    gridDelta);
    +
    // make -x and +x greater than domain for numerical stability
    +
    double minCorner[D] = {-extent - 1, -extent / 4., -15.};
    +
    double maxCorner[D] = {extent + 1, extent / 4., 1.};
    +
    auto box = lsSmartPointer<lsBox<double, D>>::New(minCorner, maxCorner);
    +
    lsMakeGeometry<double, D>(trench, box).apply();
    +
    // Create trench geometry
    +
    lsBooleanOperation<double, D>(substrate, trench,
    +
    lsBooleanOperationEnum::RELATIVE_COMPLEMENT)
    +
    .apply();
    +
    }
    +
    +
    {
    +
    std::cout << "Extracting..." << std::endl;
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    +
    lsVTKWriter(mesh, "trench-0.vtk").apply();
    +
    }
    +
    +
    // Now grow new material isotropically
    +
    +
    // create new levelset for new material, which will be grown
    +
    // since it has to wrap around the substrate, just copy it
    +
    auto newLayer = lsSmartPointer<lsDomain<double, D>>::New(substrate);
    +
    +
    std::cout << "Advecting" << std::endl;
    +
    // Grow the layer uniformly by 4 as in deposition example
    +
    auto dist =
    +
    lsSmartPointer<lsSphereDistribution<double, D>>::New(4.0, gridDelta);
    +
    lsGeometricAdvect<double, D>(newLayer, dist).apply();
    +
    +
    {
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(newLayer, mesh).apply();
    +
    lsVTKWriter(mesh, "trench-final.vtk").apply();
    +
    }
    +
    +
    return 0;
    +
    }
    +
    +
    AirGapDeposition.minCorner
    tuple minCorner
    Definition: AirGapDeposition.py:41
    +
    lsMakeGeometry::apply
    void apply()
    Definition: lsMakeGeometry.hpp:103
    + + + +
    AirGapDeposition.trench
    trench
    Definition: AirGapDeposition.py:40
    +
    AirGapDeposition.gridDelta
    float gridDelta
    Definition: AirGapDeposition.py:19
    +
    lsDomain::BoundaryType
    GridType::boundaryType BoundaryType
    Definition: lsDomain.hpp:25
    + +
    AirGapDeposition.extent
    int extent
    Definition: AirGapDeposition.py:18
    +
    AirGapDeposition.mesh
    mesh
    Definition: AirGapDeposition.py:34
    +
    lsVTKWriter
    Class handling the output of an lsMesh to VTK file types.
    Definition: lsVTKWriter.hpp:25
    +
    lsVTKWriter::apply
    void apply()
    Definition: lsVTKWriter.hpp:52
    +
    lsBooleanOperation
    This class is used to perform boolean operations on two level sets and write the resulting level set ...
    Definition: lsBooleanOperation.hpp:36
    + +
    lsDomain
    Class containing all information about the level set, including the dimensions of the domain,...
    Definition: lsDomain.hpp:19
    +
    lsMakeGeometry
    Create level sets describing basic geometric forms.
    Definition: lsMakeGeometry.hpp:19
    +
    lsGeometricAdvect::apply
    void apply()
    Perform geometrical advection.
    Definition: lsGeometricAdvect.hpp:69
    +
    lsSmartPointer::New
    static lsSmartPointer New(TArgs &&... targs)
    Use this function to create new objects when using ViennaLS.
    Definition: lsSmartPointer.hpp:21
    +
    AirGapDeposition.newLayer
    newLayer
    Definition: AirGapDeposition.py:58
    +
    AirGapDeposition.bounds
    tuple bounds
    Definition: AirGapDeposition.py:21
    +
    lsToSurfaceMesh
    Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit sur...
    Definition: lsToSurfaceMesh.hpp:18
    +
    AirGapDeposition.planeNormal
    tuple planeNormal
    Definition: AirGapDeposition.py:29
    +
    GeometricAdvection.dist
    dist
    Definition: GeometricAdvection.py:49
    +
    lsGeometricAdvect
    This class advects the level set according to a given distribution. This distribution is overlayed at...
    Definition: lsGeometricAdvect.hpp:27
    +
    lsBooleanOperation::apply
    void apply()
    perform operation
    Definition: lsBooleanOperation.hpp:199
    +
    AirGapDeposition.maxCorner
    tuple maxCorner
    Definition: AirGapDeposition.py:42
    + + +
    main
    int main()
    Definition: GeometricAdvection.cpp:22
    +
    AirGapDeposition.origin
    tuple origin
    Definition: AirGapDeposition.py:28
    + +
    lsToSurfaceMesh::apply
    void apply()
    Definition: lsToSurfaceMesh.hpp:39
    +
    lsSmartPointer
    std::shared_ptr wrapper for use with ViennaLS. lsSmartPointers should be created using the function :...
    Definition: lsSmartPointer.hpp:9
    +
    AirGapDeposition.substrate
    substrate
    Definition: AirGapDeposition.py:25
    +
    AirGapDeposition.boundaryCons
    tuple boundaryCons
    Definition: AirGapDeposition.py:22
    + + diff --git a/docs/doxygen/html/GeometricAdvection_8cpp.html b/docs/doxygen/html/GeometricAdvection_8cpp.html index 62f3f94d..4f511a99 100644 --- a/docs/doxygen/html/GeometricAdvection_8cpp.html +++ b/docs/doxygen/html/GeometricAdvection_8cpp.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/GeometricAdvection/GeometricAdvection.cpp File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -117,8 +123,9 @@

    -
    Examples:
    GeometricAdvection.cpp.
    +
    Examples
    GeometricAdvection.cpp.
    +

    @@ -129,7 +136,7 @@

    Examples
  • GeometricAdvection
  • GeometricAdvection.cpp
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/GeometricAdvection_8py-example.html b/docs/doxygen/html/GeometricAdvection_8py-example.html index 0a591f8e..b130fe81 100644 --- a/docs/doxygen/html/GeometricAdvection_8py-example.html +++ b/docs/doxygen/html/GeometricAdvection_8py-example.html @@ -1,9 +1,9 @@ - + - + ViennaLS: GeometricAdvection.py @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -85,14 +91,62 @@

    3D Example showing how to use the library for topography emulation, by creating a trench geometry. A uniform layer of a different material is then grown on top. It is the same example as Deposition but emulates the deposition rather than simulating a slow growth.

    -
    1 import viennaLS3d as vls
    2 
    3 
    9 
    10 extent = 30
    11 gridDelta = 0.5
    12 
    13 bounds = (-extent, extent, -extent, extent, -extent, extent)
    14 boundaryCons = (0, 0, 1) # 0 = reflective, 1 = infinite, 2 = periodic
    15 
    16 # create level set
    17 substrate = vls.lsDomain(bounds, boundaryCons, gridDelta)
    18 
    19 # create plane
    20 origin = (0,0,0)
    21 planeNormal = (0,0,1)
    22 
    23 vls.lsMakeGeometry(substrate, vls.lsPlane(origin, planeNormal)).apply()
    24 
    25 # create layer used for booling
    26 print("Creating box...")
    27 trench = vls.lsDomain(bounds, boundaryCons, gridDelta)
    28 minCorner = (-extent - 1, -extent / 4., -15.)
    29 maxCorner = (extent + 1, extent / 4., 1.)
    30 vls.lsMakeGeometry(trench, vls.lsBox(minCorner, maxCorner)).apply()
    31 
    32 # Create trench geometry
    33 print("Booling trench")
    34 vls.lsBooleanOperation(substrate, trench, vls.lsBooleanOperationEnum.RELATIVE_COMPLEMENT).apply()
    35 
    36 mesh = vls.lsMesh()
    37 vls.lsToSurfaceMesh(substrate, mesh).apply()
    38 vls.lsVTKWriter(mesh, "trench-initial.vtk").apply()
    39 
    40 # Now grow new material
    41 
    42 # create new levelset for new material, which will be grown
    43 # since it has to wrap around the substrate, just copy it
    44 print("Creating new layer...")
    45 newLayer = vls.lsDomain(substrate)
    46 
    47 print("Advecting")
    48 # Advect the level set
    49 dist = vls.lsSphereDistribution(4.0, gridDelta)
    50 vls.lsGeometricAdvect(newLayer, dist).apply()
    51 
    52 vls.lsToSurfaceMesh(newLayer, mesh).apply()
    53 vls.lsVTKWriter(mesh, "trench-final.vtk").apply()
    +
    1 import viennaLS3d as vls
    +
    2 
    +
    3 
    +
    9 
    +
    10 extent = 30
    +
    11 gridDelta = 0.5
    +
    12 
    +
    13 bounds = (-extent, extent, -extent, extent, -extent, extent)
    +
    14 boundaryCons = (0, 0, 1) # 0 = reflective, 1 = infinite, 2 = periodic
    +
    15 
    +
    16 # create level set
    +
    17 substrate = vls.lsDomain(bounds, boundaryCons, gridDelta)
    +
    18 
    +
    19 # create plane
    +
    20 origin = (0,0,0)
    +
    21 planeNormal = (0,0,1)
    +
    22 
    +
    23 vls.lsMakeGeometry(substrate, vls.lsPlane(origin, planeNormal)).apply()
    +
    24 
    +
    25 # create layer used for booling
    +
    26 print("Creating box...")
    +
    27 trench = vls.lsDomain(bounds, boundaryCons, gridDelta)
    +
    28 minCorner = (-extent - 1, -extent / 4., -15.)
    +
    29 maxCorner = (extent + 1, extent / 4., 1.)
    +
    30 vls.lsMakeGeometry(trench, vls.lsBox(minCorner, maxCorner)).apply()
    +
    31 
    +
    32 # Create trench geometry
    +
    33 print("Booling trench")
    +
    34 vls.lsBooleanOperation(substrate, trench, vls.lsBooleanOperationEnum.RELATIVE_COMPLEMENT).apply()
    +
    35 
    +
    36 mesh = vls.lsMesh()
    +
    37 vls.lsToSurfaceMesh(substrate, mesh).apply()
    +
    38 vls.lsVTKWriter(mesh, "trench-initial.vtk").apply()
    +
    39 
    +
    40 # Now grow new material
    +
    41 
    +
    42 # create new levelset for new material, which will be grown
    +
    43 # since it has to wrap around the substrate, just copy it
    +
    44 print("Creating new layer...")
    +
    45 newLayer = vls.lsDomain(substrate)
    +
    46 
    +
    47 print("Advecting")
    +
    48 # Advect the level set
    +
    49 dist = vls.lsSphereDistribution(4.0, gridDelta)
    +
    50 vls.lsGeometricAdvect(newLayer, dist).apply()
    +
    51 
    +
    52 vls.lsToSurfaceMesh(newLayer, mesh).apply()
    +
    53 vls.lsVTKWriter(mesh, "trench-final.vtk").apply()
    +
    diff --git a/docs/doxygen/html/GeometricAdvection_8py.html b/docs/doxygen/html/GeometricAdvection_8py.html index 81de309b..45a47fbf 100644 --- a/docs/doxygen/html/GeometricAdvection_8py.html +++ b/docs/doxygen/html/GeometricAdvection_8py.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/GeometricAdvection/GeometricAdvection.py File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -130,7 +136,7 @@
  • Examples
  • GeometricAdvection
  • GeometricAdvection.py
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/PatternedSubstrate_8cpp-example.html b/docs/doxygen/html/PatternedSubstrate_8cpp-example.html index c4b397b5..cee6ce5b 100644 --- a/docs/doxygen/html/PatternedSubstrate_8cpp-example.html +++ b/docs/doxygen/html/PatternedSubstrate_8cpp-example.html @@ -1,9 +1,9 @@ - + - + ViennaLS: PatternedSubstrate.cpp @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -85,14 +91,339 @@

    3D Example showing how to use the library for topography simulation. A hexagonal pattern of rounded cones is formed. These cones are then used as masks for etching. A uniform layer is then deposited on top creating voids in the structure.

    -
    #include <iostream>
    #include <random>
    #include <lsAdvect.hpp>
    #include <lsBooleanOperation.hpp>
    #include <lsConvexHull.hpp>
    #include <lsDomain.hpp>
    #include <lsExpand.hpp>
    #include <lsMakeGeometry.hpp>
    #include <lsPrune.hpp>
    #include <lsSmartPointer.hpp>
    #include <lsToDiskMesh.hpp>
    #include <lsToMesh.hpp>
    #include <lsToSurfaceMesh.hpp>
    #include <lsToVoxelMesh.hpp>
    #include <lsVTKWriter.hpp>
    // implement velocity field describing a directional etch
    class directionalEtch : public lsVelocityField<double> {
    public:
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    int material,
    const std::array<double, 3> &normalVector) {
    // etch directionally
    if (material > 0) {
    return (normalVector[2] > 0.) ? -normalVector[2] : 0;
    } else {
    return 0;
    }
    }
    std::array<double, 3>
    getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
    int /*material*/,
    const std::array<double, 3> & /*normalVector*/) {
    return std::array<double, 3>({});
    }
    };
    // implement velocity field describing an isotropic deposition
    class isotropicDepo : public lsVelocityField<double> {
    public:
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    int /*material*/,
    const std::array<double, 3> & /*normalVector*/) {
    // deposit isotropically everywhere
    return 1;
    }
    std::array<double, 3>
    getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
    int /*material*/,
    const std::array<double, 3> & /*normalVector*/) {
    return std::array<double, 3>({});
    }
    };
    // create a rounded cone as the primitive pattern.
    // Define a pointcloud and create a hull mesh using lsConvexHull.
    void makeRoundCone(lsSmartPointer<lsMesh> mesh,
    hrleVectorType<double, 3> center, double radius,
    double height) {
    // cone is just a circle with a point above the center
    auto cloud = lsSmartPointer<lsPointCloud<double, 3>>::New();
    // frist inside top point
    {
    hrleVectorType<double, 3> topPoint = center;
    topPoint[2] += height;
    cloud->insertNextPoint(topPoint);
    }
    // now create all points of the base
    unsigned numberOfBasePoints = 40;
    unsigned numberOfEdgePoints = 7;
    for (unsigned i = 0; i < numberOfBasePoints; ++i) {
    double angle = double(i) / double(numberOfBasePoints) * 2. * 3.141592;
    for (unsigned j = 1; j <= numberOfEdgePoints; ++j) {
    double distance = double(j) / double(numberOfEdgePoints) * radius;
    double pointHeight = std::sqrt(double(numberOfEdgePoints - j) /
    double(numberOfEdgePoints)) *
    height;
    double x = center[0] + distance * cos(angle);
    double y = center[1] + distance * sin(angle);
    cloud->insertNextPoint(
    hrleVectorType<double, 3>(x, y, center[2] + pointHeight));
    }
    }
    lsConvexHull<double, 3>(mesh, cloud).apply();
    }
    int main() {
    constexpr int D = 3;
    omp_set_num_threads(6);
    // scale in micrometers
    double coneDistance = 3.5;
    double xExtent = 21;
    double yConeDelta = std::sqrt(3) * coneDistance / 2;
    double yExtent = 6 * yConeDelta;
    double gridDelta = 0.15;
    double bounds[2 * D] = {-xExtent / 2., xExtent / 2., -yExtent / 2.,
    yExtent / 2., -5, 5};
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    boundaryCons[0] = lsDomain<double, D>::BoundaryType::PERIODIC_BOUNDARY;
    boundaryCons[1] = lsDomain<double, D>::BoundaryType::PERIODIC_BOUNDARY;
    boundaryCons[2] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    auto substrate =
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    {
    double origin[3] = {0., 0., 0.001};
    double planeNormal[3] = {0., 0., 1.};
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    lsMakeGeometry<double, D>(substrate, plane).apply();
    }
    // copy the structure to add the pattern on top
    auto pattern =
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    pattern->setLevelSetWidth(2);
    // Create varying cones and put them in hexagonal pattern ---------
    {
    std::cout << "Creating pattern..." << std::endl;
    // need to place cone one grid delta below surface to avoid rounding
    hrleVectorType<double, D> coneCenter(-xExtent / 2.0 + coneDistance / 2.0,
    -3 * yConeDelta, -gridDelta);
    double coneRadius = 1.4;
    double coneHeight = 1.5;
    // adjust since cone is slightly below the surface
    {
    double gradient = coneHeight / coneRadius;
    coneRadius += gridDelta / gradient;
    coneHeight += gridDelta * gradient;
    }
    // random radius cones
    double variation = 0.1;
    std::mt19937 gen(532132432);
    std::uniform_real_distribution<> dis(1 - variation, 1 + variation);
    // for each row
    for (unsigned j = 0; j < 6; ++j) {
    // for each cone in a row
    for (unsigned i = 0; i < 6; ++i) {
    // make ls from cone mesh and add to substrate
    auto cone = lsSmartPointer<lsDomain<double, D>>::New(
    bounds, boundaryCons, gridDelta);
    // create cone
    auto coneMesh = lsSmartPointer<lsMesh>::New();
    makeRoundCone(coneMesh, coneCenter, coneRadius * dis(gen),
    coneHeight * dis(gen));
    lsFromSurfaceMesh<double, D>(cone, coneMesh, false).apply();
    lsBooleanOperation<double, D> boolOp(pattern, cone,
    lsBooleanOperationEnum::UNION);
    boolOp.apply();
    // now shift mesh for next bool
    coneCenter[0] += coneDistance;
    }
    coneCenter[0] = -xExtent / 2. + ((j % 2) ? coneDistance / 2.0 : 0);
    coneCenter[1] += yConeDelta;
    }
    }
    lsBooleanOperation<double, D>(substrate, pattern,
    lsBooleanOperationEnum::UNION)
    .apply();
    // Etch the substrate under the pattern ---------------------------
    unsigned numberOfEtchSteps = 30;
    std::cout << "Advecting" << std::endl;
    lsAdvect<double, D> advectionKernel;
    advectionKernel.insertNextLevelSet(pattern);
    advectionKernel.insertNextLevelSet(substrate);
    {
    auto velocities = lsSmartPointer<directionalEtch>::New();
    advectionKernel.setVelocityField(velocities);
    // Now advect the level set, outputting every
    // advection step. Save the physical time that
    // passed during the advection.
    double passedTime = 0.;
    for (unsigned i = 0; i < numberOfEtchSteps; ++i) {
    std::cout << "\rEtch step " + std::to_string(i) + " / "
    << numberOfEtchSteps << std::flush;
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    lsVTKWriter(mesh, "substrate-" + std::to_string(i) + ".vtk").apply();
    advectionKernel.apply();
    passedTime += advectionKernel.getAdvectedTime();
    }
    std::cout << std::endl;
    {
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    lsVTKWriter(mesh,
    "substrate-" + std::to_string(numberOfEtchSteps) + ".vtk")
    .apply();
    }
    std::cout << "Time passed during directional etch: " << passedTime
    << std::endl;
    }
    // make disk mesh and output
    {
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToDiskMesh<double, 3>(substrate, mesh).apply();
    lsVTKWriter(mesh, lsFileFormatEnum::VTP, "diskMesh.vtp").apply();
    }
    // Deposit new layer ----------------------------------------------
    // new level set for new layer
    auto fillLayer = lsSmartPointer<lsDomain<double, D>>::New(substrate);
    {
    auto velocities = lsSmartPointer<isotropicDepo>::New();
    advectionKernel.setVelocityField(velocities);
    advectionKernel.insertNextLevelSet(fillLayer);
    // stop advection in voids, which will form
    advectionKernel.setIgnoreVoids(true);
    double passedTime = 0.;
    unsigned numberOfDepoSteps = 30;
    for (unsigned i = 0; i < numberOfDepoSteps; ++i) {
    std::cout << "\rDepo step " + std::to_string(i) + " / "
    << numberOfDepoSteps << std::flush;
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(fillLayer, mesh).apply();
    lsVTKWriter(mesh, "fillLayer-" +
    std::to_string(numberOfEtchSteps + 1 + i) + ".vtk")
    .apply();
    advectionKernel.apply();
    passedTime += advectionKernel.getAdvectedTime();
    }
    std::cout << std::endl;
    {
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(fillLayer, mesh).apply();
    lsVTKWriter(mesh,
    "fillLayer-" +
    std::to_string(numberOfEtchSteps + numberOfDepoSteps) +
    ".vtk")
    .apply();
    }
    std::cout << "Time passed during isotropic deposition: " << passedTime
    << std::endl;
    }
    // now output the final level sets
    {
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    lsVTKWriter(mesh, "final-substrate.vtk").apply();
    lsToSurfaceMesh<double, D>(fillLayer, mesh).apply();
    lsVTKWriter(mesh, "final-fillLayer.vtk").apply();
    }
    return 0;
    }
    +
    #include <iostream>
    +
    #include <random>
    +
    +
    #include <lsAdvect.hpp>
    +
    #include <lsBooleanOperation.hpp>
    +
    #include <lsConvexHull.hpp>
    +
    #include <lsDomain.hpp>
    +
    #include <lsExpand.hpp>
    +
    #include <lsMakeGeometry.hpp>
    +
    #include <lsPrune.hpp>
    +
    #include <lsSmartPointer.hpp>
    +
    #include <lsToDiskMesh.hpp>
    +
    #include <lsToMesh.hpp>
    +
    #include <lsToSurfaceMesh.hpp>
    +
    #include <lsToVoxelMesh.hpp>
    +
    #include <lsVTKWriter.hpp>
    +
    +
    // implement velocity field describing a directional etch
    +
    class directionalEtch : public lsVelocityField<double> {
    +
    public:
    +
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int material,
    +
    const std::array<double, 3> &normalVector) {
    +
    // etch directionally
    +
    if (material > 0) {
    +
    return (normalVector[2] > 0.) ? -normalVector[2] : 0;
    +
    } else {
    +
    return 0;
    +
    }
    +
    }
    +
    +
    std::array<double, 3>
    +
    getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int /*material*/,
    +
    const std::array<double, 3> & /*normalVector*/) {
    +
    return std::array<double, 3>({});
    +
    }
    +
    };
    +
    +
    // implement velocity field describing an isotropic deposition
    +
    class isotropicDepo : public lsVelocityField<double> {
    +
    public:
    +
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int /*material*/,
    +
    const std::array<double, 3> & /*normalVector*/) {
    +
    // deposit isotropically everywhere
    +
    return 1;
    +
    }
    +
    +
    std::array<double, 3>
    +
    getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int /*material*/,
    +
    const std::array<double, 3> & /*normalVector*/) {
    +
    return std::array<double, 3>({});
    +
    }
    +
    };
    +
    +
    // create a rounded cone as the primitive pattern.
    +
    // Define a pointcloud and create a hull mesh using lsConvexHull.
    +
    void makeRoundCone(lsSmartPointer<lsMesh> mesh,
    +
    hrleVectorType<double, 3> center, double radius,
    +
    double height) {
    +
    // cone is just a circle with a point above the center
    +
    auto cloud = lsSmartPointer<lsPointCloud<double, 3>>::New();
    +
    // frist inside top point
    +
    {
    +
    hrleVectorType<double, 3> topPoint = center;
    +
    topPoint[2] += height;
    +
    cloud->insertNextPoint(topPoint);
    +
    }
    +
    +
    // now create all points of the base
    +
    unsigned numberOfBasePoints = 40;
    +
    unsigned numberOfEdgePoints = 7;
    +
    for (unsigned i = 0; i < numberOfBasePoints; ++i) {
    +
    double angle = double(i) / double(numberOfBasePoints) * 2. * 3.141592;
    +
    for (unsigned j = 1; j <= numberOfEdgePoints; ++j) {
    +
    double distance = double(j) / double(numberOfEdgePoints) * radius;
    +
    double pointHeight = std::sqrt(double(numberOfEdgePoints - j) /
    +
    double(numberOfEdgePoints)) *
    +
    height;
    +
    double x = center[0] + distance * cos(angle);
    +
    double y = center[1] + distance * sin(angle);
    +
    cloud->insertNextPoint(
    +
    hrleVectorType<double, 3>(x, y, center[2] + pointHeight));
    +
    }
    +
    }
    +
    +
    lsConvexHull<double, 3>(mesh, cloud).apply();
    +
    }
    +
    +
    int main() {
    +
    +
    constexpr int D = 3;
    +
    omp_set_num_threads(6);
    +
    +
    // scale in micrometers
    +
    double coneDistance = 3.5;
    +
    double xExtent = 21;
    +
    double yConeDelta = std::sqrt(3) * coneDistance / 2;
    +
    double yExtent = 6 * yConeDelta;
    +
    +
    double gridDelta = 0.15;
    +
    +
    double bounds[2 * D] = {-xExtent / 2., xExtent / 2., -yExtent / 2.,
    +
    yExtent / 2., -5, 5};
    +
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    +
    boundaryCons[0] = lsDomain<double, D>::BoundaryType::PERIODIC_BOUNDARY;
    +
    boundaryCons[1] = lsDomain<double, D>::BoundaryType::PERIODIC_BOUNDARY;
    +
    boundaryCons[2] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    +
    +
    auto substrate =
    +
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    +
    +
    {
    +
    double origin[3] = {0., 0., 0.001};
    +
    double planeNormal[3] = {0., 0., 1.};
    +
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    +
    lsMakeGeometry<double, D>(substrate, plane).apply();
    +
    }
    +
    +
    // copy the structure to add the pattern on top
    +
    auto pattern =
    +
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    +
    pattern->setLevelSetWidth(2);
    +
    +
    // Create varying cones and put them in hexagonal pattern ---------
    +
    {
    +
    std::cout << "Creating pattern..." << std::endl;
    +
    +
    // need to place cone one grid delta below surface to avoid rounding
    +
    hrleVectorType<double, D> coneCenter(-xExtent / 2.0 + coneDistance / 2.0,
    +
    -3 * yConeDelta, -gridDelta);
    +
    double coneRadius = 1.4;
    +
    double coneHeight = 1.5;
    +
    // adjust since cone is slightly below the surface
    +
    {
    +
    double gradient = coneHeight / coneRadius;
    +
    coneRadius += gridDelta / gradient;
    +
    coneHeight += gridDelta * gradient;
    +
    }
    +
    +
    // random radius cones
    +
    double variation = 0.1;
    +
    std::mt19937 gen(532132432);
    +
    std::uniform_real_distribution<> dis(1 - variation, 1 + variation);
    +
    +
    // for each row
    +
    for (unsigned j = 0; j < 6; ++j) {
    +
    // for each cone in a row
    +
    for (unsigned i = 0; i < 6; ++i) {
    +
    // make ls from cone mesh and add to substrate
    +
    auto cone = lsSmartPointer<lsDomain<double, D>>::New(
    +
    bounds, boundaryCons, gridDelta);
    +
    // create cone
    +
    auto coneMesh = lsSmartPointer<lsMesh>::New();
    +
    makeRoundCone(coneMesh, coneCenter, coneRadius * dis(gen),
    +
    coneHeight * dis(gen));
    +
    +
    lsFromSurfaceMesh<double, D>(cone, coneMesh, false).apply();
    +
    lsBooleanOperation<double, D> boolOp(pattern, cone,
    +
    lsBooleanOperationEnum::UNION);
    +
    boolOp.apply();
    +
    +
    // now shift mesh for next bool
    +
    coneCenter[0] += coneDistance;
    +
    }
    +
    coneCenter[0] = -xExtent / 2. + ((j % 2) ? coneDistance / 2.0 : 0);
    +
    coneCenter[1] += yConeDelta;
    +
    }
    +
    }
    +
    +
    lsBooleanOperation<double, D>(substrate, pattern,
    +
    lsBooleanOperationEnum::UNION)
    +
    .apply();
    +
    +
    // Etch the substrate under the pattern ---------------------------
    +
    unsigned numberOfEtchSteps = 30;
    +
    std::cout << "Advecting" << std::endl;
    +
    +
    lsAdvect<double, D> advectionKernel;
    +
    advectionKernel.insertNextLevelSet(pattern);
    +
    advectionKernel.insertNextLevelSet(substrate);
    +
    {
    +
    auto velocities = lsSmartPointer<directionalEtch>::New();
    +
    advectionKernel.setVelocityField(velocities);
    +
    +
    // Now advect the level set, outputting every
    +
    // advection step. Save the physical time that
    +
    // passed during the advection.
    +
    double passedTime = 0.;
    +
    for (unsigned i = 0; i < numberOfEtchSteps; ++i) {
    +
    std::cout << "\rEtch step " + std::to_string(i) + " / "
    +
    << numberOfEtchSteps << std::flush;
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    +
    lsVTKWriter(mesh, "substrate-" + std::to_string(i) + ".vtk").apply();
    +
    +
    advectionKernel.apply();
    +
    passedTime += advectionKernel.getAdvectedTime();
    +
    }
    +
    std::cout << std::endl;
    +
    +
    {
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    +
    lsVTKWriter(mesh,
    +
    "substrate-" + std::to_string(numberOfEtchSteps) + ".vtk")
    +
    .apply();
    +
    }
    +
    +
    std::cout << "Time passed during directional etch: " << passedTime
    +
    << std::endl;
    +
    }
    +
    +
    // make disk mesh and output
    +
    {
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToDiskMesh<double, 3>(substrate, mesh).apply();
    +
    lsVTKWriter(mesh, lsFileFormatEnum::VTP, "diskMesh.vtp").apply();
    +
    }
    +
    +
    // Deposit new layer ----------------------------------------------
    +
    // new level set for new layer
    +
    auto fillLayer = lsSmartPointer<lsDomain<double, D>>::New(substrate);
    +
    {
    +
    auto velocities = lsSmartPointer<isotropicDepo>::New();
    +
    advectionKernel.setVelocityField(velocities);
    +
    +
    advectionKernel.insertNextLevelSet(fillLayer);
    +
    +
    // stop advection in voids, which will form
    +
    advectionKernel.setIgnoreVoids(true);
    +
    +
    double passedTime = 0.;
    +
    unsigned numberOfDepoSteps = 30;
    +
    for (unsigned i = 0; i < numberOfDepoSteps; ++i) {
    +
    std::cout << "\rDepo step " + std::to_string(i) + " / "
    +
    << numberOfDepoSteps << std::flush;
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(fillLayer, mesh).apply();
    +
    lsVTKWriter(mesh, "fillLayer-" +
    +
    std::to_string(numberOfEtchSteps + 1 + i) + ".vtk")
    +
    .apply();
    +
    +
    advectionKernel.apply();
    +
    passedTime += advectionKernel.getAdvectedTime();
    +
    }
    +
    std::cout << std::endl;
    +
    +
    {
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(fillLayer, mesh).apply();
    +
    lsVTKWriter(mesh,
    +
    "fillLayer-" +
    +
    std::to_string(numberOfEtchSteps + numberOfDepoSteps) +
    +
    ".vtk")
    +
    .apply();
    +
    }
    +
    +
    std::cout << "Time passed during isotropic deposition: " << passedTime
    +
    << std::endl;
    +
    }
    +
    +
    // now output the final level sets
    +
    {
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    +
    lsVTKWriter(mesh, "final-substrate.vtk").apply();
    +
    +
    lsToSurfaceMesh<double, D>(fillLayer, mesh).apply();
    +
    lsVTKWriter(mesh, "final-fillLayer.vtk").apply();
    +
    }
    +
    +
    return 0;
    +
    }
    +
    + +
    lsMakeGeometry::apply
    void apply()
    Definition: lsMakeGeometry.hpp:103
    + + + +
    lsConvexHull
    This algorithm creates a convex hull mesh from a point cloud. This is done using the gift wrapping ap...
    Definition: lsConvexHull.hpp:19
    +
    AirGapDeposition.gridDelta
    float gridDelta
    Definition: AirGapDeposition.py:19
    +
    lsDomain::BoundaryType
    GridType::boundaryType BoundaryType
    Definition: lsDomain.hpp:25
    +
    AirGapDeposition.passedTime
    int passedTime
    Definition: AirGapDeposition.py:76
    + + + +
    AirGapDeposition.mesh
    mesh
    Definition: AirGapDeposition.py:34
    +
    lsVTKWriter
    Class handling the output of an lsMesh to VTK file types.
    Definition: lsVTKWriter.hpp:25
    +
    lsVTKWriter::apply
    void apply()
    Definition: lsVTKWriter.hpp:52
    +
    lsBooleanOperation
    This class is used to perform boolean operations on two level sets and write the resulting level set ...
    Definition: lsBooleanOperation.hpp:36
    + +
    lsDomain
    Class containing all information about the level set, including the dimensions of the domain,...
    Definition: lsDomain.hpp:19
    +
    lsMakeGeometry
    Create level sets describing basic geometric forms.
    Definition: lsMakeGeometry.hpp:19
    + +
    lsVelocityField::getScalarVelocity
    virtual T getScalarVelocity(const std::array< T, 3 > &, int, const std::array< T, 3 > &)
    Should return a scalar value for the velocity at coordinate for a point of material with the given no...
    Definition: lsVelocityField.hpp:14
    +
    lsVelocityField
    Abstract class defining the interface for the velocity field used during advection using lsAdvect.
    Definition: lsVelocityField.hpp:8
    +
    lsToDiskMesh::apply
    void apply()
    Definition: lsToDiskMesh.hpp:41
    +
    AirGapDeposition.advectionKernel
    advectionKernel
    Definition: AirGapDeposition.py:63
    +
    lsSmartPointer::New
    static lsSmartPointer New(TArgs &&... targs)
    Use this function to create new objects when using ViennaLS.
    Definition: lsSmartPointer.hpp:21
    +
    AirGapDeposition.bounds
    tuple bounds
    Definition: AirGapDeposition.py:21
    +
    lsToSurfaceMesh
    Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit sur...
    Definition: lsToSurfaceMesh.hpp:18
    +
    AirGapDeposition.planeNormal
    tuple planeNormal
    Definition: AirGapDeposition.py:29
    +
    lsBooleanOperation::apply
    void apply()
    perform operation
    Definition: lsBooleanOperation.hpp:199
    + + +
    AirGapDeposition.origin
    tuple origin
    Definition: AirGapDeposition.py:28
    +
    lsFromSurfaceMesh
    Construct a level set from an explicit mesh.
    Definition: lsFromSurfaceMesh.hpp:13
    +
    makeRoundCone
    void makeRoundCone(lsSmartPointer< lsMesh > mesh, hrleVectorType< double, 3 > center, double radius, double height)
    Definition: PatternedSubstrate.cpp:68
    +
    AirGapDeposition.velocities
    velocities
    Definition: AirGapDeposition.py:60
    + +
    lsToDiskMesh
    This class creates a mesh from the level set with all grid points with a level set value <= 0....
    Definition: lsToDiskMesh.hpp:19
    +
    lsFromSurfaceMesh::apply
    void apply()
    Definition: lsFromSurfaceMesh.hpp:234
    +
    lsToSurfaceMesh::apply
    void apply()
    Definition: lsToSurfaceMesh.hpp:39
    +
    lsAdvect
    This class is used to advance level sets over time. Level sets are passed to the constructor in an st...
    Definition: lsAdvect.hpp:54
    + + +
    main
    int main()
    Definition: PatternedSubstrate.cpp:100
    +
    AirGapDeposition.substrate
    substrate
    Definition: AirGapDeposition.py:25
    +
    lsVelocityField::getVectorVelocity
    virtual std::array< T, 3 > getVectorVelocity(const std::array< T, 3 > &, int, const std::array< T, 3 > &)
    Like getScalarVelocity, but returns a velocity value for each cartesian direction.
    Definition: lsVelocityField.hpp:23
    +
    AirGapDeposition.boundaryCons
    tuple boundaryCons
    Definition: AirGapDeposition.py:22
    +
    lsConvexHull::apply
    void apply()
    Definition: lsConvexHull.hpp:280
    + + diff --git a/docs/doxygen/html/PatternedSubstrate_8cpp.html b/docs/doxygen/html/PatternedSubstrate_8cpp.html index 2089f60f..4e32dc09 100644 --- a/docs/doxygen/html/PatternedSubstrate_8cpp.html +++ b/docs/doxygen/html/PatternedSubstrate_8cpp.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/PatternedSubstrate/PatternedSubstrate.cpp File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -124,8 +130,9 @@

    -
    Examples:
    PatternedSubstrate.cpp.
    +
    Examples
    PatternedSubstrate.cpp.
    +

    @@ -165,8 +172,9 @@

    -
    Examples:
    PatternedSubstrate.cpp.
    +
    Examples
    PatternedSubstrate.cpp.
    + @@ -177,7 +185,7 @@

    Examples
  • PatternedSubstrate
  • PatternedSubstrate.cpp
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/PeriodicBoundary_8cpp-example.html b/docs/doxygen/html/PeriodicBoundary_8cpp-example.html index 7c2c8290..5575c384 100644 --- a/docs/doxygen/html/PeriodicBoundary_8cpp-example.html +++ b/docs/doxygen/html/PeriodicBoundary_8cpp-example.html @@ -1,9 +1,9 @@ - + - + ViennaLS: PeriodicBoundary.cpp @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -85,14 +91,156 @@

    3D Example showing how to use the library for topography simulation. A uniform layer is deposited on top of a pillar using periodic boundary conditions.

    -
    #include <iostream>
    #include <lsAdvect.hpp>
    #include <lsBooleanOperation.hpp>
    #include <lsDomain.hpp>
    #include <lsExpand.hpp>
    #include <lsMakeGeometry.hpp>
    #include <lsPrune.hpp>
    #include <lsToSurfaceMesh.hpp>
    #include <lsToVoxelMesh.hpp>
    #include <lsVTKWriter.hpp>
    // implement own velocity field
    class velocityField : public lsVelocityField<double> {
    public:
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    int /*material*/,
    const std::array<double, 3> & /*normalVector*/) {
    // isotropic etch rate
    return 1;
    }
    std::array<double, 3>
    getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
    int /*material*/,
    const std::array<double, 3> & /*normalVector*/) {
    return std::array<double, 3>({});
    }
    };
    int main() {
    constexpr int D = 3;
    omp_set_num_threads(6);
    double extent = 20;
    double gridDelta = 0.5;
    double bounds[2 * D] = {-extent, extent, -extent, extent, -extent, extent};
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    boundaryCons[0] = lsDomain<double, D>::BoundaryType::PERIODIC_BOUNDARY;
    boundaryCons[1] = lsDomain<double, D>::BoundaryType::PERIODIC_BOUNDARY;
    boundaryCons[2] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    auto substrate =
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    {
    double origin[3] = {0., 0., 0.};
    double planeNormal[3] = {0., 0., 1.};
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    lsMakeGeometry<double, D>(substrate, plane).apply();
    }
    {
    // create spheres used for booling
    std::cout << "Creating pillar..." << std::endl;
    auto pillar = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
    gridDelta);
    double lowerCorner[D] = {15, 15, -1};
    double upperCorner[D] = {25, 25, 10};
    auto box = lsSmartPointer<lsBox<double, D>>::New(lowerCorner, upperCorner);
    lsMakeGeometry<double, D>(pillar, box).apply();
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(pillar, mesh).apply();
    lsVTKWriter(mesh, "pillar.vtk").apply();
    lsBooleanOperation<double, D> boolOp(substrate, pillar,
    lsBooleanOperationEnum::UNION);
    boolOp.apply();
    }
    // Now etch the substrate isotropically
    auto velocities = lsSmartPointer<velocityField>::New();
    std::cout << "Advecting" << std::endl;
    lsAdvect<double, D> advectionKernel;
    advectionKernel.insertNextLevelSet(substrate);
    advectionKernel.setVelocityField(velocities);
    advectionKernel.setIntegrationScheme(
    lsIntegrationSchemeEnum::ENGQUIST_OSHER_2ND_ORDER);
    // Now advect the level set 50 times, outputting every
    // advection step. Save the physical time that
    // passed during the advection.
    double passedTime = 0.;
    unsigned numberOfSteps = 50;
    for (unsigned i = 0; i < numberOfSteps; ++i) {
    std::cout << "\rAdvection step " + std::to_string(i) + " / "
    << numberOfSteps << std::flush;
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    lsVTKWriter(mesh, "pillar-" + std::to_string(i) + ".vtk").apply();
    advectionKernel.apply();
    passedTime += advectionKernel.getAdvectedTime();
    }
    std::cout << std::endl;
    std::cout << "Time passed during advection: " << passedTime << std::endl;
    return 0;
    }
    +
    #include <iostream>
    +
    +
    #include <lsAdvect.hpp>
    +
    #include <lsBooleanOperation.hpp>
    +
    #include <lsDomain.hpp>
    +
    #include <lsExpand.hpp>
    +
    #include <lsMakeGeometry.hpp>
    +
    #include <lsPrune.hpp>
    +
    #include <lsToSurfaceMesh.hpp>
    +
    #include <lsToVoxelMesh.hpp>
    +
    #include <lsVTKWriter.hpp>
    +
    +
    // implement own velocity field
    +
    class velocityField : public lsVelocityField<double> {
    +
    public:
    +
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int /*material*/,
    +
    const std::array<double, 3> & /*normalVector*/) {
    +
    // isotropic etch rate
    +
    return 1;
    +
    }
    +
    +
    std::array<double, 3>
    +
    getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int /*material*/,
    +
    const std::array<double, 3> & /*normalVector*/) {
    +
    return std::array<double, 3>({});
    +
    }
    +
    };
    +
    +
    int main() {
    +
    +
    constexpr int D = 3;
    +
    omp_set_num_threads(6);
    +
    +
    double extent = 20;
    +
    double gridDelta = 0.5;
    +
    +
    double bounds[2 * D] = {-extent, extent, -extent, extent, -extent, extent};
    +
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    +
    boundaryCons[0] = lsDomain<double, D>::BoundaryType::PERIODIC_BOUNDARY;
    +
    boundaryCons[1] = lsDomain<double, D>::BoundaryType::PERIODIC_BOUNDARY;
    +
    boundaryCons[2] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    +
    +
    auto substrate =
    +
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    +
    +
    {
    +
    double origin[3] = {0., 0., 0.};
    +
    double planeNormal[3] = {0., 0., 1.};
    +
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    +
    lsMakeGeometry<double, D>(substrate, plane).apply();
    +
    }
    +
    +
    {
    +
    // create spheres used for booling
    +
    std::cout << "Creating pillar..." << std::endl;
    +
    auto pillar = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
    +
    gridDelta);
    +
    double lowerCorner[D] = {15, 15, -1};
    +
    double upperCorner[D] = {25, 25, 10};
    +
    auto box = lsSmartPointer<lsBox<double, D>>::New(lowerCorner, upperCorner);
    +
    lsMakeGeometry<double, D>(pillar, box).apply();
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(pillar, mesh).apply();
    +
    lsVTKWriter(mesh, "pillar.vtk").apply();
    +
    lsBooleanOperation<double, D> boolOp(substrate, pillar,
    +
    lsBooleanOperationEnum::UNION);
    +
    boolOp.apply();
    +
    }
    +
    +
    // Now etch the substrate isotropically
    +
    auto velocities = lsSmartPointer<velocityField>::New();
    +
    +
    std::cout << "Advecting" << std::endl;
    +
    +
    lsAdvect<double, D> advectionKernel;
    +
    advectionKernel.insertNextLevelSet(substrate);
    +
    advectionKernel.setVelocityField(velocities);
    +
    advectionKernel.setIntegrationScheme(
    +
    lsIntegrationSchemeEnum::ENGQUIST_OSHER_2ND_ORDER);
    +
    +
    // Now advect the level set 50 times, outputting every
    +
    // advection step. Save the physical time that
    +
    // passed during the advection.
    +
    double passedTime = 0.;
    +
    unsigned numberOfSteps = 50;
    +
    for (unsigned i = 0; i < numberOfSteps; ++i) {
    +
    std::cout << "\rAdvection step " + std::to_string(i) + " / "
    +
    << numberOfSteps << std::flush;
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    +
    lsVTKWriter(mesh, "pillar-" + std::to_string(i) + ".vtk").apply();
    +
    +
    advectionKernel.apply();
    +
    passedTime += advectionKernel.getAdvectedTime();
    +
    }
    +
    std::cout << std::endl;
    +
    +
    std::cout << "Time passed during advection: " << passedTime << std::endl;
    +
    +
    return 0;
    +
    }
    +
    +
    lsMakeGeometry::apply
    void apply()
    Definition: lsMakeGeometry.hpp:103
    + + +
    main
    int main()
    Definition: PeriodicBoundary.cpp:38
    + +
    AirGapDeposition.gridDelta
    float gridDelta
    Definition: AirGapDeposition.py:19
    +
    lsDomain::BoundaryType
    GridType::boundaryType BoundaryType
    Definition: lsDomain.hpp:25
    +
    AirGapDeposition.passedTime
    int passedTime
    Definition: AirGapDeposition.py:76
    +
    AirGapDeposition.extent
    int extent
    Definition: AirGapDeposition.py:18
    + +
    AirGapDeposition.numberOfSteps
    int numberOfSteps
    Definition: AirGapDeposition.py:77
    +
    AirGapDeposition.mesh
    mesh
    Definition: AirGapDeposition.py:34
    +
    lsVTKWriter
    Class handling the output of an lsMesh to VTK file types.
    Definition: lsVTKWriter.hpp:25
    +
    lsVTKWriter::apply
    void apply()
    Definition: lsVTKWriter.hpp:52
    +
    lsBooleanOperation
    This class is used to perform boolean operations on two level sets and write the resulting level set ...
    Definition: lsBooleanOperation.hpp:36
    + +
    lsDomain
    Class containing all information about the level set, including the dimensions of the domain,...
    Definition: lsDomain.hpp:19
    +
    lsMakeGeometry
    Create level sets describing basic geometric forms.
    Definition: lsMakeGeometry.hpp:19
    + +
    lsVelocityField::getScalarVelocity
    virtual T getScalarVelocity(const std::array< T, 3 > &, int, const std::array< T, 3 > &)
    Should return a scalar value for the velocity at coordinate for a point of material with the given no...
    Definition: lsVelocityField.hpp:14
    +
    lsVelocityField
    Abstract class defining the interface for the velocity field used during advection using lsAdvect.
    Definition: lsVelocityField.hpp:8
    +
    AirGapDeposition.advectionKernel
    advectionKernel
    Definition: AirGapDeposition.py:63
    +
    lsSmartPointer::New
    static lsSmartPointer New(TArgs &&... targs)
    Use this function to create new objects when using ViennaLS.
    Definition: lsSmartPointer.hpp:21
    +
    AirGapDeposition.bounds
    tuple bounds
    Definition: AirGapDeposition.py:21
    +
    lsToSurfaceMesh
    Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit sur...
    Definition: lsToSurfaceMesh.hpp:18
    +
    AirGapDeposition.planeNormal
    tuple planeNormal
    Definition: AirGapDeposition.py:29
    + + +
    AirGapDeposition.origin
    tuple origin
    Definition: AirGapDeposition.py:28
    +
    AirGapDeposition.velocities
    velocities
    Definition: AirGapDeposition.py:60
    +
    lsToSurfaceMesh::apply
    void apply()
    Definition: lsToSurfaceMesh.hpp:39
    +
    lsAdvect
    This class is used to advance level sets over time. Level sets are passed to the constructor in an st...
    Definition: lsAdvect.hpp:54
    +
    lsSmartPointer
    std::shared_ptr wrapper for use with ViennaLS. lsSmartPointers should be created using the function :...
    Definition: lsSmartPointer.hpp:9
    + +
    AirGapDeposition.substrate
    substrate
    Definition: AirGapDeposition.py:25
    +
    lsVelocityField::getVectorVelocity
    virtual std::array< T, 3 > getVectorVelocity(const std::array< T, 3 > &, int, const std::array< T, 3 > &)
    Like getScalarVelocity, but returns a velocity value for each cartesian direction.
    Definition: lsVelocityField.hpp:23
    +
    AirGapDeposition.boundaryCons
    tuple boundaryCons
    Definition: AirGapDeposition.py:22
    + + diff --git a/docs/doxygen/html/PeriodicBoundary_8cpp.html b/docs/doxygen/html/PeriodicBoundary_8cpp.html index 9671e426..19af97f4 100644 --- a/docs/doxygen/html/PeriodicBoundary_8cpp.html +++ b/docs/doxygen/html/PeriodicBoundary_8cpp.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/PeriodicBoundary/PeriodicBoundary.cpp File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -117,8 +123,9 @@

    -
    Examples:
    PeriodicBoundary.cpp.
    +
    Examples
    PeriodicBoundary.cpp.
    +

    @@ -129,7 +136,7 @@

    Examples
  • PeriodicBoundary
  • PeriodicBoundary.cpp
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/README_8md.html b/docs/doxygen/html/README_8md.html index 9c4da9b5..b653b643 100644 --- a/docs/doxygen/html/README_8md.html +++ b/docs/doxygen/html/README_8md.html @@ -1,9 +1,9 @@ - + - + ViennaLS: README.md File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -92,7 +98,7 @@
  • README.md
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/SharedLib_8cpp-example.html b/docs/doxygen/html/SharedLib_8cpp-example.html index 4f428489..d49ba91c 100644 --- a/docs/doxygen/html/SharedLib_8cpp-example.html +++ b/docs/doxygen/html/SharedLib_8cpp-example.html @@ -1,9 +1,9 @@ - + - + ViennaLS: SharedLib.cpp @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -85,14 +91,95 @@

    This example shows how to make sure the pre-built shared library is used. ViennaLS is a header only project. However, certain commonly used template specializations can be built with the library and used during developement to decrease compile times. In order to make sure these pre-compiled types are used, typedefs for those types are included with each header. These typedefs will also be available when building as header-only in order to avoid code changes. The available specialisations are listed in "lsPreCompileMacros.hpp"

    -
    #include <iostream>
    #include <lsBooleanOperation.hpp>
    #include <lsDomain.hpp>
    #include <lsExpand.hpp>
    #include <lsMakeGeometry.hpp>
    #include <lsPrune.hpp>
    #include <lsToSurfaceMesh.hpp>
    #include <lsVTKWriter.hpp>
    int main() {
    // do not need to define dimension
    // since we are using predefined typedefs
    // constexpr int D = 3;
    omp_set_num_threads(4);
    double gridDelta = 0.25;
    // Usually we would use lsDomain<float, D>.
    // Since we want to make sure we get an error
    // if we do not use a pre-built type, we use
    // the specialization typedef
    auto sphere1 = lsSmartPointer<lsDomain_float_3>::New(gridDelta);
    auto sphere2 = lsSmartPointer<lsDomain_float_3>::New(gridDelta);
    float origin[3] = {5., 0., 0.};
    float radius = 7.3;
    {
    // these typedefs are available for all templated classes
    auto sphere = lsSmartPointer<lsSphere_float_3>::New(origin, radius);
    lsMakeGeometry_float_3(sphere1, sphere).apply();
    origin[0] = -5.0;
    radius = 9.5;
    sphere = lsSmartPointer<lsSphere_float_3>::New(origin, radius);
    lsMakeGeometry_float_3(sphere2, sphere).apply();
    }
    {
    auto mesh1 = lsSmartPointer<lsMesh>::New();
    auto mesh2 = lsSmartPointer<lsMesh>::New();
    std::cout << "Extracting..." << std::endl;
    lsToSurfaceMesh_float_3(sphere1, mesh1).apply();
    lsToSurfaceMesh_float_3(sphere2, mesh2).apply();
    lsVTKWriter(mesh1, "sphere1.vtk").apply();
    lsVTKWriter(mesh2, "sphere2.vtk").apply();
    }
    // Perform a boolean operation
    lsBooleanOperation_float_3(sphere1, sphere2,
    lsBooleanOperationEnum::RELATIVE_COMPLEMENT)
    .apply();
    std::cout << "Extracting..." << std::endl;
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh_float_3(sphere1, mesh).apply();
    mesh->print();
    lsVTKWriter(mesh, "after.vtk").apply();
    return 0;
    }
    +
    #include <iostream>
    +
    +
    #include <lsBooleanOperation.hpp>
    +
    #include <lsDomain.hpp>
    +
    #include <lsExpand.hpp>
    +
    #include <lsMakeGeometry.hpp>
    +
    #include <lsPrune.hpp>
    +
    #include <lsToSurfaceMesh.hpp>
    +
    #include <lsVTKWriter.hpp>
    +
    +
    int main() {
    +
    +
    // do not need to define dimension
    +
    // since we are using predefined typedefs
    +
    // constexpr int D = 3;
    +
    omp_set_num_threads(4);
    +
    +
    double gridDelta = 0.25;
    +
    +
    // Usually we would use lsDomain<float, D>.
    +
    // Since we want to make sure we get an error
    +
    // if we do not use a pre-built type, we use
    +
    // the specialization typedef
    +
    auto sphere1 = lsSmartPointer<lsDomain_float_3>::New(gridDelta);
    +
    auto sphere2 = lsSmartPointer<lsDomain_float_3>::New(gridDelta);
    +
    +
    float origin[3] = {5., 0., 0.};
    +
    float radius = 7.3;
    +
    +
    {
    +
    // these typedefs are available for all templated classes
    +
    auto sphere = lsSmartPointer<lsSphere_float_3>::New(origin, radius);
    +
    lsMakeGeometry_float_3(sphere1, sphere).apply();
    +
    origin[0] = -5.0;
    +
    radius = 9.5;
    +
    sphere = lsSmartPointer<lsSphere_float_3>::New(origin, radius);
    +
    lsMakeGeometry_float_3(sphere2, sphere).apply();
    +
    }
    +
    +
    {
    +
    auto mesh1 = lsSmartPointer<lsMesh>::New();
    +
    auto mesh2 = lsSmartPointer<lsMesh>::New();
    +
    +
    std::cout << "Extracting..." << std::endl;
    +
    lsToSurfaceMesh_float_3(sphere1, mesh1).apply();
    +
    lsToSurfaceMesh_float_3(sphere2, mesh2).apply();
    +
    +
    lsVTKWriter(mesh1, "sphere1.vtk").apply();
    +
    lsVTKWriter(mesh2, "sphere2.vtk").apply();
    +
    }
    +
    +
    // Perform a boolean operation
    +
    lsBooleanOperation_float_3(sphere1, sphere2,
    +
    lsBooleanOperationEnum::RELATIVE_COMPLEMENT)
    +
    .apply();
    +
    +
    std::cout << "Extracting..." << std::endl;
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh_float_3(sphere1, mesh).apply();
    +
    +
    mesh->print();
    +
    +
    lsVTKWriter(mesh, "after.vtk").apply();
    +
    +
    return 0;
    +
    }
    +
    + + +
    AirGapDeposition.gridDelta
    float gridDelta
    Definition: AirGapDeposition.py:19
    +
    AirGapDeposition.mesh
    mesh
    Definition: AirGapDeposition.py:34
    +
    lsVTKWriter
    Class handling the output of an lsMesh to VTK file types.
    Definition: lsVTKWriter.hpp:25
    +
    lsVTKWriter::apply
    void apply()
    Definition: lsVTKWriter.hpp:52
    + +
    lsSmartPointer::New
    static lsSmartPointer New(TArgs &&... targs)
    Use this function to create new objects when using ViennaLS.
    Definition: lsSmartPointer.hpp:21
    + + +
    AirGapDeposition.origin
    tuple origin
    Definition: AirGapDeposition.py:28
    + +
    main
    int main()
    Definition: SharedLib.cpp:22
    + + diff --git a/docs/doxygen/html/SharedLib_8cpp.html b/docs/doxygen/html/SharedLib_8cpp.html index 50f7c225..d93fe41a 100644 --- a/docs/doxygen/html/SharedLib_8cpp.html +++ b/docs/doxygen/html/SharedLib_8cpp.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/SharedLib/SharedLib.cpp File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -115,8 +121,9 @@

    -
    Examples:
    SharedLib.cpp.
    +
    Examples
    SharedLib.cpp.
    +

    @@ -127,7 +134,7 @@

    Examples
  • SharedLib
  • SharedLib.cpp
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/SquareEtch_8cpp-example.html b/docs/doxygen/html/SquareEtch_8cpp-example.html index cfa5083c..df164d8b 100644 --- a/docs/doxygen/html/SquareEtch_8cpp-example.html +++ b/docs/doxygen/html/SquareEtch_8cpp-example.html @@ -1,9 +1,9 @@ - + - + ViennaLS: SquareEtch.cpp @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -85,14 +91,258 @@

    3D Example showing how to use the library for topography simulation, by creating a square trench geometry. A patch of exposed substrate is etched directionally.

    -
    #include <iostream>
    #include <lsAdvect.hpp>
    #include <lsBooleanOperation.hpp>
    #include <lsDomain.hpp>
    #include <lsExpand.hpp>
    #include <lsMakeGeometry.hpp>
    #include <lsPrune.hpp>
    #include <lsToMesh.hpp>
    #include <lsToSurfaceMesh.hpp>
    #include <lsVTKWriter.hpp>
    // Numerical velocity field.
    // Advection scheme will take care of numerical
    // artefacts itself.
    class velocityField : public lsVelocityField<double> {
    public:
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    int material,
    const std::array<double, 3> &normalVector) {
    // if the surface of material 1 is facing upwards, etch it anisotropically
    if (material == 1 && normalVector[1] > 0.) {
    return -std::abs(normalVector[1]);
    } else
    return 0.;
    }
    };
    // Same velocity field, but analytical
    // If the dissipation alphas can be derived,
    // this will produce better results than numerical
    // approximations. lsLocalLaxFriedrichsAnalytical has
    // to be used for advection.
    class analyticalField : public lsVelocityField<double> {
    const double velocity = -1;
    public:
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    int material,
    const std::array<double, 3> &normalVector) {
    if (material != 1)
    return 0.;
    return velocity * std::abs(normalVector[1]);
    }
    double getDissipationAlpha(int direction, int material,
    const std::array<double, 3> &centralDifferences) {
    if (material != 1)
    return 0;
    double gradient = 0.;
    for (unsigned i = 0; i < 3; ++i) {
    gradient += centralDifferences[i] * centralDifferences[i];
    }
    gradient = std::sqrt(gradient);
    // alpha for different directions
    if (direction == 0) {
    return 0;
    } else if (direction == 1) {
    return std::abs(velocity);
    } else {
    return 0;
    }
    }
    };
    int main() {
    constexpr int D = 2;
    omp_set_num_threads(1);
    // Change this to use the analytical velocity field
    const bool useAnalyticalVelocity = false;
    double extent = 30;
    double gridDelta = 0.47;
    double bounds[2 * D] = {-extent, extent, -extent,
    extent}; //, -extent, extent};
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    for (unsigned i = 0; i < D - 1; ++i)
    boundaryCons[i] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
    boundaryCons[D - 1] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    auto substrate =
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    double origin[3] = {0., 0., 0.};
    double planeNormal[3] = {0., D == 2, D == 3};
    {
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    lsMakeGeometry<double, D>(substrate, plane).apply();
    }
    double trenchBottom = -2.;
    {
    auto trench = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
    gridDelta);
    // trench bottom is the initial bottom of the trench
    double minCorner[D] = {-extent / 1.5, trenchBottom};
    double maxCorner[D] = {extent / 1.5, 1.};
    auto box = lsSmartPointer<lsBox<double, D>>::New(minCorner, maxCorner);
    lsMakeGeometry<double, D>(trench, box).apply();
    // Create trench geometry
    lsBooleanOperation<double, D>(substrate, trench,
    lsBooleanOperationEnum::RELATIVE_COMPLEMENT)
    .apply();
    }
    // in order only to etch the bottom of the trench, we need a mask layer
    auto mask =
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    // make downward facing plane to remove bottom of trench for the mask
    // layer
    // add small offset so bottom of trench is definetly gone
    origin[D - 1] = trenchBottom + 1e-9;
    planeNormal[D - 1] = -1.;
    lsMakeGeometry<double, D>(
    mask, lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal))
    .apply();
    lsBooleanOperation<double, D>(mask, substrate,
    lsBooleanOperationEnum::INTERSECT)
    .apply();
    std::string fileName;
    if (useAnalyticalVelocity)
    fileName = "analytical-";
    else
    fileName = "numerical-";
    {
    std::cout << "Extracting..." << std::endl;
    // output substrate layer (which wraps around mask layer)
    // wrapping is necessary for stable advection
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    lsVTKWriter(mesh, fileName + "0.vtk").apply();
    // output mask layer
    lsToSurfaceMesh<double, D>(mask, mesh).apply();
    lsVTKWriter(mesh, "mask.vtk").apply();
    }
    // START ADVECTION
    auto velocities = lsSmartPointer<velocityField>::New();
    lsSmartPointer<analyticalField> analyticalVelocities;
    std::cout << "Advecting" << std::endl;
    lsAdvect<double, D> advectionKernel;
    // the level set to be advected has to be inserted last
    // the other is used as the mask layer for etching
    advectionKernel.insertNextLevelSet(mask);
    advectionKernel.insertNextLevelSet(substrate);
    advectionKernel.setSaveAdvectionVelocities(true);
    if (useAnalyticalVelocity) {
    advectionKernel.setVelocityField(analyticalVelocities);
    // Analytical velocity fields and dissipation coefficients
    // can only be used with this integration scheme
    advectionKernel.setIntegrationScheme(
    lsIntegrationSchemeEnum::LOCAL_LAX_FRIEDRICHS_ANALYTICAL_1ST_ORDER);
    } else {
    // for numerical velocities, just use the default
    // integration scheme, which is not accurate for certain
    // velocity functions but very fast
    advectionKernel.setVelocityField(velocities);
    // For coordinate independent velocity functions
    // this numerical scheme is superior though.
    // However, it is slower.
    // advectionKernel.setIntegrationScheme(
    // lsIntegrationSchemeEnum::STENCIL_LOCAL_LAX_FRIEDRICHS_1ST_ORDER);
    }
    // advect the level set until 50s have passed
    double finalTime = 50;
    unsigned counter = 1;
    for (double time = 0.; time < finalTime;
    time += advectionKernel.getAdvectedTime()) {
    advectionKernel.apply();
    std::cout << "Advection step: " << counter
    << ", time: " << advectionKernel.getAdvectedTime() << std::endl;
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    lsVTKWriter(mesh, fileName + std::to_string(counter) + ".vtk").apply();
    ++counter;
    }
    std::cout << std::endl;
    std::cout << "Number of Advection steps taken: " << counter << std::endl;
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    lsVTKWriter(mesh, "final.vtk").apply();
    return 0;
    }
    +
    #include <iostream>
    +
    +
    #include <lsAdvect.hpp>
    +
    #include <lsBooleanOperation.hpp>
    +
    #include <lsDomain.hpp>
    +
    #include <lsExpand.hpp>
    +
    #include <lsMakeGeometry.hpp>
    +
    #include <lsPrune.hpp>
    +
    #include <lsToMesh.hpp>
    +
    #include <lsToSurfaceMesh.hpp>
    +
    #include <lsVTKWriter.hpp>
    +
    +
    // Numerical velocity field.
    +
    // Advection scheme will take care of numerical
    +
    // artefacts itself.
    +
    class velocityField : public lsVelocityField<double> {
    +
    public:
    +
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int material,
    +
    const std::array<double, 3> &normalVector) {
    +
    // if the surface of material 1 is facing upwards, etch it anisotropically
    +
    if (material == 1 && normalVector[1] > 0.) {
    +
    return -std::abs(normalVector[1]);
    +
    } else
    +
    return 0.;
    +
    }
    +
    };
    +
    +
    // Same velocity field, but analytical
    +
    // If the dissipation alphas can be derived,
    +
    // this will produce better results than numerical
    +
    // approximations. lsLocalLaxFriedrichsAnalytical has
    +
    // to be used for advection.
    +
    class analyticalField : public lsVelocityField<double> {
    +
    const double velocity = -1;
    +
    +
    public:
    +
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int material,
    +
    const std::array<double, 3> &normalVector) {
    +
    if (material != 1)
    +
    return 0.;
    +
    +
    return velocity * std::abs(normalVector[1]);
    +
    }
    +
    +
    double getDissipationAlpha(int direction, int material,
    +
    const std::array<double, 3> &centralDifferences) {
    +
    if (material != 1)
    +
    return 0;
    +
    +
    double gradient = 0.;
    +
    for (unsigned i = 0; i < 3; ++i) {
    +
    gradient += centralDifferences[i] * centralDifferences[i];
    +
    }
    +
    gradient = std::sqrt(gradient);
    +
    +
    // alpha for different directions
    +
    if (direction == 0) {
    +
    return 0;
    +
    } else if (direction == 1) {
    +
    return std::abs(velocity);
    +
    } else {
    +
    return 0;
    +
    }
    +
    }
    +
    };
    +
    +
    int main() {
    +
    +
    constexpr int D = 2;
    +
    omp_set_num_threads(1);
    +
    +
    // Change this to use the analytical velocity field
    +
    const bool useAnalyticalVelocity = false;
    +
    +
    double extent = 30;
    +
    double gridDelta = 0.47;
    +
    +
    double bounds[2 * D] = {-extent, extent, -extent,
    +
    extent}; //, -extent, extent};
    +
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    +
    for (unsigned i = 0; i < D - 1; ++i)
    +
    boundaryCons[i] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
    +
    boundaryCons[D - 1] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    +
    +
    auto substrate =
    +
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    +
    +
    double origin[3] = {0., 0., 0.};
    +
    double planeNormal[3] = {0., D == 2, D == 3};
    +
    {
    +
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    +
    lsMakeGeometry<double, D>(substrate, plane).apply();
    +
    }
    +
    +
    double trenchBottom = -2.;
    +
    {
    +
    auto trench = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
    +
    gridDelta);
    +
    // trench bottom is the initial bottom of the trench
    +
    double minCorner[D] = {-extent / 1.5, trenchBottom};
    +
    double maxCorner[D] = {extent / 1.5, 1.};
    +
    auto box = lsSmartPointer<lsBox<double, D>>::New(minCorner, maxCorner);
    +
    lsMakeGeometry<double, D>(trench, box).apply();
    +
    +
    // Create trench geometry
    +
    lsBooleanOperation<double, D>(substrate, trench,
    +
    lsBooleanOperationEnum::RELATIVE_COMPLEMENT)
    +
    .apply();
    +
    }
    +
    +
    // in order only to etch the bottom of the trench, we need a mask layer
    +
    auto mask =
    +
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    +
    // make downward facing plane to remove bottom of trench for the mask
    +
    // layer
    +
    // add small offset so bottom of trench is definetly gone
    +
    origin[D - 1] = trenchBottom + 1e-9;
    +
    planeNormal[D - 1] = -1.;
    +
    lsMakeGeometry<double, D>(
    +
    mask, lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal))
    +
    .apply();
    +
    lsBooleanOperation<double, D>(mask, substrate,
    +
    lsBooleanOperationEnum::INTERSECT)
    +
    .apply();
    +
    +
    std::string fileName;
    +
    if (useAnalyticalVelocity)
    +
    fileName = "analytical-";
    +
    else
    +
    fileName = "numerical-";
    +
    {
    +
    std::cout << "Extracting..." << std::endl;
    +
    // output substrate layer (which wraps around mask layer)
    +
    // wrapping is necessary for stable advection
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    +
    lsVTKWriter(mesh, fileName + "0.vtk").apply();
    +
    +
    // output mask layer
    +
    lsToSurfaceMesh<double, D>(mask, mesh).apply();
    +
    lsVTKWriter(mesh, "mask.vtk").apply();
    +
    }
    +
    +
    // START ADVECTION
    +
    auto velocities = lsSmartPointer<velocityField>::New();
    +
    lsSmartPointer<analyticalField> analyticalVelocities;
    +
    +
    std::cout << "Advecting" << std::endl;
    +
    lsAdvect<double, D> advectionKernel;
    +
    +
    // the level set to be advected has to be inserted last
    +
    // the other is used as the mask layer for etching
    +
    advectionKernel.insertNextLevelSet(mask);
    +
    advectionKernel.insertNextLevelSet(substrate);
    +
    advectionKernel.setSaveAdvectionVelocities(true);
    +
    +
    if (useAnalyticalVelocity) {
    +
    advectionKernel.setVelocityField(analyticalVelocities);
    +
    // Analytical velocity fields and dissipation coefficients
    +
    // can only be used with this integration scheme
    +
    advectionKernel.setIntegrationScheme(
    +
    lsIntegrationSchemeEnum::LOCAL_LAX_FRIEDRICHS_ANALYTICAL_1ST_ORDER);
    +
    } else {
    +
    // for numerical velocities, just use the default
    +
    // integration scheme, which is not accurate for certain
    +
    // velocity functions but very fast
    +
    advectionKernel.setVelocityField(velocities);
    +
    +
    // For coordinate independent velocity functions
    +
    // this numerical scheme is superior though.
    +
    // However, it is slower.
    +
    // advectionKernel.setIntegrationScheme(
    +
    // lsIntegrationSchemeEnum::STENCIL_LOCAL_LAX_FRIEDRICHS_1ST_ORDER);
    +
    }
    +
    +
    // advect the level set until 50s have passed
    +
    double finalTime = 50;
    +
    unsigned counter = 1;
    +
    for (double time = 0.; time < finalTime;
    +
    time += advectionKernel.getAdvectedTime()) {
    +
    advectionKernel.apply();
    +
    std::cout << "Advection step: " << counter
    +
    << ", time: " << advectionKernel.getAdvectedTime() << std::endl;
    +
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    +
    lsVTKWriter(mesh, fileName + std::to_string(counter) + ".vtk").apply();
    +
    ++counter;
    +
    }
    +
    std::cout << std::endl;
    +
    std::cout << "Number of Advection steps taken: " << counter << std::endl;
    +
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    +
    lsVTKWriter(mesh, "final.vtk").apply();
    +
    +
    return 0;
    +
    }
    +
    +
    AirGapDeposition.minCorner
    tuple minCorner
    Definition: AirGapDeposition.py:41
    +
    Deposition.counter
    int counter
    Definition: Deposition.py:67
    +
    lsMakeGeometry::apply
    void apply()
    Definition: lsMakeGeometry.hpp:103
    + + +
    AirGapDeposition.trench
    trench
    Definition: AirGapDeposition.py:40
    +
    AirGapDeposition.gridDelta
    float gridDelta
    Definition: AirGapDeposition.py:19
    +
    lsDomain::BoundaryType
    GridType::boundaryType BoundaryType
    Definition: lsDomain.hpp:25
    + +
    AirGapDeposition.extent
    int extent
    Definition: AirGapDeposition.py:18
    + +
    AirGapDeposition.mesh
    mesh
    Definition: AirGapDeposition.py:34
    +
    lsVTKWriter
    Class handling the output of an lsMesh to VTK file types.
    Definition: lsVTKWriter.hpp:25
    +
    lsVTKWriter::apply
    void apply()
    Definition: lsVTKWriter.hpp:52
    +
    lsBooleanOperation
    This class is used to perform boolean operations on two level sets and write the resulting level set ...
    Definition: lsBooleanOperation.hpp:36
    + +
    lsDomain
    Class containing all information about the level set, including the dimensions of the domain,...
    Definition: lsDomain.hpp:19
    +
    lsMakeGeometry
    Create level sets describing basic geometric forms.
    Definition: lsMakeGeometry.hpp:19
    +
    lsVelocityField::getScalarVelocity
    virtual T getScalarVelocity(const std::array< T, 3 > &, int, const std::array< T, 3 > &)
    Should return a scalar value for the velocity at coordinate for a point of material with the given no...
    Definition: lsVelocityField.hpp:14
    +
    lsVelocityField
    Abstract class defining the interface for the velocity field used during advection using lsAdvect.
    Definition: lsVelocityField.hpp:8
    +
    AirGapDeposition.advectionKernel
    advectionKernel
    Definition: AirGapDeposition.py:63
    +
    lsSmartPointer::New
    static lsSmartPointer New(TArgs &&... targs)
    Use this function to create new objects when using ViennaLS.
    Definition: lsSmartPointer.hpp:21
    +
    AirGapDeposition.bounds
    tuple bounds
    Definition: AirGapDeposition.py:21
    +
    lsToSurfaceMesh
    Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit sur...
    Definition: lsToSurfaceMesh.hpp:18
    +
    AirGapDeposition.planeNormal
    tuple planeNormal
    Definition: AirGapDeposition.py:29
    +
    lsBooleanOperation::apply
    void apply()
    perform operation
    Definition: lsBooleanOperation.hpp:199
    +
    AirGapDeposition.maxCorner
    tuple maxCorner
    Definition: AirGapDeposition.py:42
    + + + +
    AirGapDeposition.origin
    tuple origin
    Definition: AirGapDeposition.py:28
    + +
    main
    int main()
    Definition: SquareEtch.cpp:76
    +
    AirGapDeposition.velocities
    velocities
    Definition: AirGapDeposition.py:60
    + +
    lsVelocityField::getDissipationAlpha
    virtual T getDissipationAlpha(int, int, const std::array< T, 3 > &)
    If lsLocalLaxFriedrichsAnalytical is used as the advection scheme, this is called to provide the anal...
    Definition: lsVelocityField.hpp:32
    +
    lsToSurfaceMesh::apply
    void apply()
    Definition: lsToSurfaceMesh.hpp:39
    +
    lsAdvect
    This class is used to advance level sets over time. Level sets are passed to the constructor in an st...
    Definition: lsAdvect.hpp:54
    +
    lsSmartPointer
    std::shared_ptr wrapper for use with ViennaLS. lsSmartPointers should be created using the function :...
    Definition: lsSmartPointer.hpp:9
    +
    AirGapDeposition.substrate
    substrate
    Definition: AirGapDeposition.py:25
    +
    lsPlane
    Class describing a plane via a point in it and the plane normal.
    Definition: lsGeometries.hpp:33
    +
    AirGapDeposition.boundaryCons
    tuple boundaryCons
    Definition: AirGapDeposition.py:22
    + + diff --git a/docs/doxygen/html/SquareEtch_8cpp.html b/docs/doxygen/html/SquareEtch_8cpp.html index f2df910a..2ae2b143 100644 --- a/docs/doxygen/html/SquareEtch_8cpp.html +++ b/docs/doxygen/html/SquareEtch_8cpp.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/SquareEtch/SquareEtch.cpp File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -117,8 +123,9 @@

    -
    Examples:
    SquareEtch.cpp.
    +
    Examples
    SquareEtch.cpp.
    +

    @@ -129,7 +136,7 @@

    Examples
  • SquareEtch
  • SquareEtch.cpp
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/VoidEtching_8cpp-example.html b/docs/doxygen/html/VoidEtching_8cpp-example.html index 23676465..0de91f39 100644 --- a/docs/doxygen/html/VoidEtching_8cpp-example.html +++ b/docs/doxygen/html/VoidEtching_8cpp-example.html @@ -1,9 +1,9 @@ - + - + ViennaLS: VoidEtching.cpp @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -85,14 +91,183 @@

    3D Example showing how to use the library for topography simulation. A substrate with big air inclusions is etched isotropically. Voids are detected automatically and only etched once they are exposed.

    -
    #include <iostream>
    #include <lsAdvect.hpp>
    #include <lsBooleanOperation.hpp>
    #include <lsDomain.hpp>
    #include <lsExpand.hpp>
    #include <lsMakeGeometry.hpp>
    #include <lsPrune.hpp>
    #include <lsToSurfaceMesh.hpp>
    #include <lsToVoxelMesh.hpp>
    #include <lsVTKWriter.hpp>
    // implement own velocity field
    class velocityField : public lsVelocityField<double> {
    public:
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    int /*material*/,
    const std::array<double, 3> & /*normalVector*/) {
    // isotropic etch rate
    return -1;
    }
    std::array<double, 3>
    getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
    int /*material*/,
    const std::array<double, 3> & /*normalVector*/) {
    return std::array<double, 3>({});
    }
    };
    int main() {
    constexpr int D = 3;
    omp_set_num_threads(4);
    double extent = 30;
    double gridDelta = 1;
    double bounds[2 * D] = {-extent, extent, -extent, extent, -extent, extent};
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    boundaryCons[0] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
    boundaryCons[1] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
    boundaryCons[2] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    auto substrate =
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    double origin[3] = {0., 0., 0.};
    {
    double planeNormal[3] = {0., 0., 1.};
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    lsMakeGeometry<double, D>(substrate, plane).apply();
    }
    {
    // create spheres used for booling
    std::cout << "Creating spheres..." << std::endl;
    auto sphere = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
    gridDelta);
    origin[0] = -12;
    origin[1] = -5;
    origin[2] = -15;
    double radius = 10;
    lsMakeGeometry<double, D>(
    sphere, lsSmartPointer<lsSphere<double, D>>::New(origin, radius))
    .apply();
    lsBooleanOperation<double, D> boolOp(
    substrate, sphere, lsBooleanOperationEnum::RELATIVE_COMPLEMENT);
    boolOp.apply();
    origin[0] = -7;
    origin[1] = -30;
    origin[2] = -20;
    radius = 8;
    lsMakeGeometry<double, D>(
    sphere, lsSmartPointer<lsSphere<double, D>>::New(origin, radius))
    .apply();
    // reference to substrate and sphere are kept in boolOp
    boolOp.apply();
    origin[0] = 5;
    origin[1] = 15;
    origin[2] = -2;
    radius = 8;
    lsMakeGeometry<double, D>(
    sphere, lsSmartPointer<lsSphere<double, D>>::New(origin, radius))
    .apply();
    boolOp.apply();
    origin[0] = 2;
    origin[1] = 8;
    origin[2] = -27;
    radius = 8;
    lsMakeGeometry<double, D>(
    sphere, lsSmartPointer<lsSphere<double, D>>::New(origin, radius))
    .apply();
    boolOp.apply();
    }
    // Now etch the substrate isotropically
    auto velocities = lsSmartPointer<velocityField>::New();
    std::cout << "Advecting" << std::endl;
    lsAdvect<double, D> advectionKernel;
    advectionKernel.insertNextLevelSet(substrate);
    advectionKernel.setVelocityField(velocities);
    advectionKernel.setIgnoreVoids(true);
    // Now advect the level set 50 times, outputting every
    // advection step. Save the physical time that
    // passed during the advection.
    double passedTime = 0.;
    unsigned numberOfSteps = 50;
    for (unsigned i = 0; i < numberOfSteps; ++i) {
    std::cout << "\rAdvection step " + std::to_string(i) + " / "
    << numberOfSteps << std::flush;
    auto mesh = lsSmartPointer<lsMesh>::New();
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    lsVTKWriter(mesh, "void-" + std::to_string(i) + ".vtk").apply();
    advectionKernel.apply();
    passedTime += advectionKernel.getAdvectedTime();
    }
    std::cout << std::endl;
    std::cout << "Time passed during advection: " << passedTime << std::endl;
    return 0;
    }
    +
    #include <iostream>
    +
    +
    #include <lsAdvect.hpp>
    +
    #include <lsBooleanOperation.hpp>
    +
    #include <lsDomain.hpp>
    +
    #include <lsExpand.hpp>
    +
    #include <lsMakeGeometry.hpp>
    +
    #include <lsPrune.hpp>
    +
    #include <lsToSurfaceMesh.hpp>
    +
    #include <lsToVoxelMesh.hpp>
    +
    #include <lsVTKWriter.hpp>
    +
    +
    // implement own velocity field
    +
    class velocityField : public lsVelocityField<double> {
    +
    public:
    +
    double getScalarVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int /*material*/,
    +
    const std::array<double, 3> & /*normalVector*/) {
    +
    // isotropic etch rate
    +
    return -1;
    +
    }
    +
    +
    std::array<double, 3>
    +
    getVectorVelocity(const std::array<double, 3> & /*coordinate*/,
    +
    int /*material*/,
    +
    const std::array<double, 3> & /*normalVector*/) {
    +
    return std::array<double, 3>({});
    +
    }
    +
    };
    +
    +
    int main() {
    +
    +
    constexpr int D = 3;
    +
    omp_set_num_threads(4);
    +
    +
    double extent = 30;
    +
    double gridDelta = 1;
    +
    +
    double bounds[2 * D] = {-extent, extent, -extent, extent, -extent, extent};
    +
    lsDomain<double, D>::BoundaryType boundaryCons[D];
    +
    boundaryCons[0] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
    +
    boundaryCons[1] = lsDomain<double, D>::BoundaryType::REFLECTIVE_BOUNDARY;
    +
    boundaryCons[2] = lsDomain<double, D>::BoundaryType::INFINITE_BOUNDARY;
    +
    +
    auto substrate =
    +
    lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons, gridDelta);
    +
    +
    double origin[3] = {0., 0., 0.};
    +
    {
    +
    double planeNormal[3] = {0., 0., 1.};
    +
    auto plane = lsSmartPointer<lsPlane<double, D>>::New(origin, planeNormal);
    +
    lsMakeGeometry<double, D>(substrate, plane).apply();
    +
    }
    +
    +
    {
    +
    // create spheres used for booling
    +
    std::cout << "Creating spheres..." << std::endl;
    +
    auto sphere = lsSmartPointer<lsDomain<double, D>>::New(bounds, boundaryCons,
    +
    gridDelta);
    +
    origin[0] = -12;
    +
    origin[1] = -5;
    +
    origin[2] = -15;
    +
    double radius = 10;
    +
    lsMakeGeometry<double, D>(
    +
    sphere, lsSmartPointer<lsSphere<double, D>>::New(origin, radius))
    +
    .apply();
    +
    lsBooleanOperation<double, D> boolOp(
    +
    substrate, sphere, lsBooleanOperationEnum::RELATIVE_COMPLEMENT);
    +
    boolOp.apply();
    +
    +
    origin[0] = -7;
    +
    origin[1] = -30;
    +
    origin[2] = -20;
    +
    radius = 8;
    +
    lsMakeGeometry<double, D>(
    +
    sphere, lsSmartPointer<lsSphere<double, D>>::New(origin, radius))
    +
    .apply();
    +
    // reference to substrate and sphere are kept in boolOp
    +
    boolOp.apply();
    +
    +
    origin[0] = 5;
    +
    origin[1] = 15;
    +
    origin[2] = -2;
    +
    radius = 8;
    +
    lsMakeGeometry<double, D>(
    +
    sphere, lsSmartPointer<lsSphere<double, D>>::New(origin, radius))
    +
    .apply();
    +
    boolOp.apply();
    +
    +
    origin[0] = 2;
    +
    origin[1] = 8;
    +
    origin[2] = -27;
    +
    radius = 8;
    +
    lsMakeGeometry<double, D>(
    +
    sphere, lsSmartPointer<lsSphere<double, D>>::New(origin, radius))
    +
    .apply();
    +
    boolOp.apply();
    +
    }
    +
    +
    // Now etch the substrate isotropically
    +
    auto velocities = lsSmartPointer<velocityField>::New();
    +
    +
    std::cout << "Advecting" << std::endl;
    +
    +
    lsAdvect<double, D> advectionKernel;
    +
    advectionKernel.insertNextLevelSet(substrate);
    +
    advectionKernel.setVelocityField(velocities);
    +
    advectionKernel.setIgnoreVoids(true);
    +
    +
    // Now advect the level set 50 times, outputting every
    +
    // advection step. Save the physical time that
    +
    // passed during the advection.
    +
    double passedTime = 0.;
    +
    unsigned numberOfSteps = 50;
    +
    for (unsigned i = 0; i < numberOfSteps; ++i) {
    +
    std::cout << "\rAdvection step " + std::to_string(i) + " / "
    +
    << numberOfSteps << std::flush;
    +
    auto mesh = lsSmartPointer<lsMesh>::New();
    +
    lsToSurfaceMesh<double, D>(substrate, mesh).apply();
    +
    lsVTKWriter(mesh, "void-" + std::to_string(i) + ".vtk").apply();
    +
    +
    advectionKernel.apply();
    +
    passedTime += advectionKernel.getAdvectedTime();
    +
    }
    +
    std::cout << std::endl;
    +
    +
    std::cout << "Time passed during advection: " << passedTime << std::endl;
    +
    +
    return 0;
    +
    }
    +
    +
    main
    int main()
    Definition: VoidEtching.cpp:38
    +
    lsMakeGeometry::apply
    void apply()
    Definition: lsMakeGeometry.hpp:103
    + + +
    AirGapDeposition.gridDelta
    float gridDelta
    Definition: AirGapDeposition.py:19
    +
    lsDomain::BoundaryType
    GridType::boundaryType BoundaryType
    Definition: lsDomain.hpp:25
    +
    AirGapDeposition.passedTime
    int passedTime
    Definition: AirGapDeposition.py:76
    +
    AirGapDeposition.extent
    int extent
    Definition: AirGapDeposition.py:18
    + +
    AirGapDeposition.numberOfSteps
    int numberOfSteps
    Definition: AirGapDeposition.py:77
    +
    AirGapDeposition.mesh
    mesh
    Definition: AirGapDeposition.py:34
    +
    lsVTKWriter
    Class handling the output of an lsMesh to VTK file types.
    Definition: lsVTKWriter.hpp:25
    +
    lsVTKWriter::apply
    void apply()
    Definition: lsVTKWriter.hpp:52
    +
    lsBooleanOperation
    This class is used to perform boolean operations on two level sets and write the resulting level set ...
    Definition: lsBooleanOperation.hpp:36
    + +
    lsDomain
    Class containing all information about the level set, including the dimensions of the domain,...
    Definition: lsDomain.hpp:19
    +
    lsMakeGeometry
    Create level sets describing basic geometric forms.
    Definition: lsMakeGeometry.hpp:19
    + +
    lsVelocityField::getScalarVelocity
    virtual T getScalarVelocity(const std::array< T, 3 > &, int, const std::array< T, 3 > &)
    Should return a scalar value for the velocity at coordinate for a point of material with the given no...
    Definition: lsVelocityField.hpp:14
    +
    lsVelocityField
    Abstract class defining the interface for the velocity field used during advection using lsAdvect.
    Definition: lsVelocityField.hpp:8
    +
    AirGapDeposition.advectionKernel
    advectionKernel
    Definition: AirGapDeposition.py:63
    +
    lsSmartPointer::New
    static lsSmartPointer New(TArgs &&... targs)
    Use this function to create new objects when using ViennaLS.
    Definition: lsSmartPointer.hpp:21
    +
    AirGapDeposition.bounds
    tuple bounds
    Definition: AirGapDeposition.py:21
    +
    lsToSurfaceMesh
    Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit sur...
    Definition: lsToSurfaceMesh.hpp:18
    +
    AirGapDeposition.planeNormal
    tuple planeNormal
    Definition: AirGapDeposition.py:29
    +
    lsSphere
    Class describing a sphere via origin and radius.
    Definition: lsGeometries.hpp:12
    + + +
    AirGapDeposition.origin
    tuple origin
    Definition: AirGapDeposition.py:28
    + +
    AirGapDeposition.velocities
    velocities
    Definition: AirGapDeposition.py:60
    +
    lsToSurfaceMesh::apply
    void apply()
    Definition: lsToSurfaceMesh.hpp:39
    +
    lsAdvect
    This class is used to advance level sets over time. Level sets are passed to the constructor in an st...
    Definition: lsAdvect.hpp:54
    +
    lsSmartPointer
    std::shared_ptr wrapper for use with ViennaLS. lsSmartPointers should be created using the function :...
    Definition: lsSmartPointer.hpp:9
    +
    AirGapDeposition.substrate
    substrate
    Definition: AirGapDeposition.py:25
    +
    lsVelocityField::getVectorVelocity
    virtual std::array< T, 3 > getVectorVelocity(const std::array< T, 3 > &, int, const std::array< T, 3 > &)
    Like getScalarVelocity, but returns a velocity value for each cartesian direction.
    Definition: lsVelocityField.hpp:23
    +
    AirGapDeposition.boundaryCons
    tuple boundaryCons
    Definition: AirGapDeposition.py:22
    + + diff --git a/docs/doxygen/html/VoidEtching_8cpp.html b/docs/doxygen/html/VoidEtching_8cpp.html index 2967125a..2ff9def5 100644 --- a/docs/doxygen/html/VoidEtching_8cpp.html +++ b/docs/doxygen/html/VoidEtching_8cpp.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/VoidEtching/VoidEtching.cpp File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -117,8 +123,9 @@

    -
    Examples:
    VoidEtching.cpp.
    +
    Examples
    VoidEtching.cpp.
    +

    @@ -129,7 +136,7 @@

    Examples
  • VoidEtching
  • VoidEtching.cpp
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/annotated.html b/docs/doxygen/html/annotated.html index 65807c4f..fabacfa2 100644 --- a/docs/doxygen/html/annotated.html +++ b/docs/doxygen/html/annotated.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Class List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -95,21 +101,21 @@  ClsFiniteDifferences  ClsGraph  ClsLaxFriedrichsLax Friedrichs integration scheme with constant alpha value for dissipation. This alpha value should be fitted based on the results of the advection and passed to the advection Kernel - ClsLocalLaxFriedrichsLax Friedrichs integration scheme, which uses a first neighbour stencil to calculate the alpha values for all neighbours. The largest alpha value is then chosen for dissipation. Slower than lsLocalLocalLaxFriedrichs or lsEngquistOsher but more reliable for complex velocity fields - ClsLocalLaxFriedrichsAnalyticalLax Friedrichs integration scheme, which uses alpha values provided by the user in getDissipationAlphas in lsVelocityField. If it is possible to derive analytical solutions for the velocityField and the alpha values, this integration scheme should be used and never otherwise + ClsLocalLaxFriedrichsLax Friedrichs integration scheme, which uses a first neighbour stencil to calculate the alpha values for all neighbours. The largest alpha value is then chosen for dissipation. Slower than lsLocalLocalLaxFriedrichs or lsEngquistOsher but more reliable for complex velocity fields + ClsLocalLaxFriedrichsAnalyticalLax Friedrichs integration scheme, which uses alpha values provided by the user in getDissipationAlphas in lsVelocityField. If it is possible to derive analytical solutions for the velocityField and the alpha values, this integration scheme should be used and never otherwise  ClsLocalLocalLaxFriedrichsLax Friedrichs integration scheme, which considers only the current point for alpha calculation. Faster than lsLocalLaxFriedrichs but not as accurate  ClsMarchingCubesHelper class for lsToSurfaceMesh. Should not be used directly  ClsStencilLocalLaxFriedrichsScalarStencil Local Lax Friedrichs Integration Scheme. It uses a stencil of order around active points, in order to evaluate dissipation values for each point, taking into account the mathematical nature of the speed function. see Toifl et al., 2019. ISBN: 978-1-7281-0938-1; DOI: 10.1109/SISPAD.2019.8870443 - ClsAdvectThis class is used to advance level sets over time. Level sets are passed to the constructor in an std::vector, with the last element being the level set to advect, or "top level set", while the others are then adjusted afterwards. In order to ensure that advection works correctly, the "top level set" has to include all lower level sets: LS_top = LS_top U LS_i for i = {0 ... n}, where n is the number of level sets. The velocities used to advect the level set are given in a concrete implementation of the lsVelocityField (check Advection examples for guidance) + ClsAdvectThis class is used to advance level sets over time. Level sets are passed to the constructor in an std::vector, with the last element being the level set to advect, or "top level set", while the others are then adjusted afterwards. In order to ensure that advection works correctly, the "top level set" has to include all lower level sets: LS_top = LS_top U LS_i for i = {0 ... n}, where n is the number of level sets. The velocities used to advect the level set are given in a concrete implementation of the lsVelocityField (check Advection examples for guidance)  ClsBooleanOperationThis class is used to perform boolean operations on two level sets and write the resulting level set into the first passed level set. When the boolean operation is set to CUSTOM, a comparator must be set using setBooleanOperationComparator. This comparator returns one value generated from the level set value supplied by each level set. E.g.: for a union, the comparator will always return the smaller of the two values  ClsBoxClass describing a square box from one coordinate to another  ClsBoxDistributionConcrete implementation of lsGeometricAdvectDistribution for a rectangular box distribution - ClsCalculateNormalVectorsThis algorithm is used to compute the normal vectors for all points with level set values <= 0.5. The result is saved in the lsPointData of the lsDomain and can be retrieved with lsDomain.getPointData().getVectorData("Normals"). Since neighbors in each cartesian direction are necessary for the calculation, the levelset width must be >=3 + ClsCalculateNormalVectorsThis algorithm is used to compute the normal vectors for all points with level set values <= 0.5. The result is saved in the lsPointData of the lsDomain and can be retrieved with lsDomain.getPointData().getVectorData("Normals"). Since neighbors in each cartesian direction are necessary for the calculation, the levelset width must be >=3  ClsCheckThis class is used to find errors in the underlying level set structure, like invalid neighbours of different signs  ClsConvexHullThis algorithm creates a convex hull mesh from a point cloud. This is done using the gift wrapping approach. The points in the point cloud must be unique  ClsDomainClass containing all information about the level set, including the dimensions of the domain, boundary conditions and all data  ClsExpandExpands the leveleSet to the specified number of layers. The largest value in the levelset is thus width*0.5 Returns the number of added points - ClsFromMeshImport the regular grid, on which the level set values are defined, from an explicit lsMesh. The Vertices must be defined, as well as a scalar data field "LSValues". If used for custom read-in, make sure all vertices are lexicographically sorted + ClsFromMeshImport the regular grid, on which the level set values are defined, from an explicit lsMesh. The Vertices must be defined, as well as a scalar data field "LSValues". If used for custom read-in, make sure all vertices are lexicographically sorted  ClsFromSurfaceMeshConstruct a level set from an explicit mesh  ClsFromVolumeMeshThis class creates a level set from a tetrahedral mesh. If the mesh contains a scalar data array called "Material", one level set for each material will be created and stored in the supplied std::vector<lsDomain<T,D>> object  ClsGeometricAdvectThis class advects the level set according to a given distribution. This distribution is overlayed at every grid point of the old surface. All cells within this distribution are then filled, with cells at the edge marked with the correct level set values. Therefore, the surface can be shifted long distances in one step. This algorithm is therefore preferable to normal advection if there is growth/reduction by a geometric directional distribution @@ -123,17 +129,17 @@  ClsPointDataThis class holds data associated with points in space  ClsPruneRemoves all level set points, which do not have at least one oppositely signed neighbour (Meaning they do not lie directly at the interface). Afterwards the level set will occupy the least memory possible  ClsReader - ClsReduceReduce the level set size to the specified width. This means all level set points with value <= 0.5*width are removed, reducing the memory footprint of the lsDomain + ClsReduceReduce the level set size to the specified width. This means all level set points with value <= 0.5*width are removed, reducing the memory footprint of the lsDomain  ClsSmartPointerStd::shared_ptr wrapper for use with ViennaLS. lsSmartPointers should be created using the function ::New(...). All other interface functions are identical to std::shared_ptr  ClsSphereClass describing a sphere via origin and radius  ClsSphereDistributionConcrete implementation of lsGeometricAdvectDistribution for a spherical advection distribution  ClsToDiskMeshThis class creates a mesh from the level set with all grid points with a level set value <= 0.5. These grid points are shifted in space towards the direction of their normal vector by grid delta * LS value. Grid delta and the origin grid point are saved for each point. This allows for a simple setup of disks for ray tracing - ClsToMeshExtract the regular grid, on which the level set values are defined, to an explicit lsMesh. The Vertices will contain the level set value stored at its location. (This is very useful for debugging) - ClsToSurfaceMeshExtract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit surface elements: Lines in 2D, Triangles in 3D + ClsToMeshExtract the regular grid, on which the level set values are defined, to an explicit lsMesh. The Vertices will contain the level set value stored at its location. (This is very useful for debugging) + ClsToSurfaceMeshExtract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit surface elements: Lines in 2D, Triangles in 3D  ClsToVoxelMeshCreates a mesh, which consists only of quads/hexas for completely filled grid cells in the level set. Interfaces will not be smooth but stepped. (This can be used to create meshes for finite difference algorithms)  ClsVelocityFieldAbstract class defining the interface for the velocity field used during advection using lsAdvect  ClsVTKReaderClass handling the import of VTK file types - ClsVTKWriterClass handling the output of an lsMesh to VTK file types + ClsVTKWriterClass handling the output of an lsMesh to VTK file types  ClsWriter
    @@ -144,7 +150,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classAirGapDeposition_1_1velocityField-members.html b/docs/doxygen/html/classAirGapDeposition_1_1velocityField-members.html index a3978d7f..6f25054a 100644 --- a/docs/doxygen/html/classAirGapDeposition_1_1velocityField-members.html +++ b/docs/doxygen/html/classAirGapDeposition_1_1velocityField-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -96,7 +102,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classAirGapDeposition_1_1velocityField.html b/docs/doxygen/html/classAirGapDeposition_1_1velocityField.html index 895c63a5..96c5ab72 100644 --- a/docs/doxygen/html/classAirGapDeposition_1_1velocityField.html +++ b/docs/doxygen/html/classAirGapDeposition_1_1velocityField.html @@ -1,9 +1,9 @@ - + - + ViennaLS: AirGapDeposition.velocityField Class Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -91,9 +97,7 @@ Inheritance diagram for AirGapDeposition.velocityField:
    - - - +

    @@ -195,7 +199,7 @@

    AirGapDeposition
  • velocityField
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classDeposition_1_1velocityField-members.html b/docs/doxygen/html/classDeposition_1_1velocityField-members.html index ab2c5bcc..9591ed87 100644 --- a/docs/doxygen/html/classDeposition_1_1velocityField-members.html +++ b/docs/doxygen/html/classDeposition_1_1velocityField-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -96,7 +102,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classDeposition_1_1velocityField.html b/docs/doxygen/html/classDeposition_1_1velocityField.html index aafbc2e4..31cb0bf9 100644 --- a/docs/doxygen/html/classDeposition_1_1velocityField.html +++ b/docs/doxygen/html/classDeposition_1_1velocityField.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Deposition.velocityField Class Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -91,9 +97,7 @@ Inheritance diagram for Deposition.velocityField:
    - - - +

    @@ -195,7 +199,7 @@

    Deposition
  • velocityField
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classes.html b/docs/doxygen/html/classes.html index 02522b77..ee4cd43e 100644 --- a/docs/doxygen/html/classes.html +++ b/docs/doxygen/html/classes.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Class Index @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -87,19 +93,69 @@
    i | l | v
    - - + + + + + + + + + + + + + + + + + - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
      i  
    -    		lsConvexHull   lsLaxFriedrichs (lsInternal)   lsPointData   lsToVoxelMesh   
    lsDomain   lsLocalLaxFriedrichs (lsInternal)   lsPrune   lsVelocityField   
    lsFromSurfaceMesh::box::iterator   lsEnquistOsher (lsInternal)   lsLocalLaxFriedrichsAnalytical (lsInternal)   lsReader   lsVTKReader   
    lsConvexHull   lsLaxFriedrichs (lsInternal)   lsPointData   lsToVoxelMesh   
    lsDomain   lsLocalLaxFriedrichs (lsInternal)   lsPrune   lsVelocityField   
    lsFromSurfaceMesh::box::iterator   lsEnquistOsher (lsInternal)   lsLocalLaxFriedrichsAnalytical (lsInternal)   lsReader   lsVTKReader   
      l  
    -    		lsExpand   lsLocalLocalLaxFriedrichs (lsInternal)   lsReduce   lsVTKWriter   
    lsFiniteDifferences (lsInternal)   lsMakeGeometry   lsSmartPointer   lsWriter   
    lsAdvect   lsFromMesh   lsMarchingCubes (lsInternal)   lsSphere   
      v  
    -
    lsBooleanOperation   lsFromSurfaceMesh   lsMarkVoidPoints   lsSphereDistribution   
    lsBox   lsFromVolumeMesh   lsMesh   lsStencilLocalLaxFriedrichsScalar (lsInternal)   velocityField (Deposition)   
    lsBoxDistribution   lsGeometricAdvect   lsMessage   lsToDiskMesh   velocityField (AirGapDeposition)   
    lsCalculateNormalVectors   lsGeometricAdvectDistribution   lsPlane   lsToMesh   
    lsCheck   lsGraph (lsInternal)   lsPointCloud   lsToSurfaceMesh   
    lsExpand   lsLocalLocalLaxFriedrichs (lsInternal)   lsReduce   lsVTKWriter   
    lsFiniteDifferences (lsInternal)   lsMakeGeometry   lsSmartPointer   lsWriter   
    lsAdvect   lsFromMesh   lsMarchingCubes (lsInternal)   lsSphere   
      v  
    +
    lsBooleanOperation   lsFromSurfaceMesh   lsMarkVoidPoints   lsSphereDistribution   
    lsBox   lsFromVolumeMesh   lsMesh   lsStencilLocalLaxFriedrichsScalar (lsInternal)   velocityField (Deposition)   
    lsBoxDistribution   lsGeometricAdvect   lsMessage   lsToDiskMesh   velocityField (AirGapDeposition)   
    lsCalculateNormalVectors   lsGeometricAdvectDistribution   lsPlane   lsToMesh   
    lsCheck   lsGraph (lsInternal)   lsPointCloud   lsToSurfaceMesh   
    i | l | v
    @@ -110,7 +166,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsAdvect-members.html b/docs/doxygen/html/classlsAdvect-members.html index 024fb595..ecd2fe3f 100644 --- a/docs/doxygen/html/classlsAdvect-members.html +++ b/docs/doxygen/html/classlsAdvect-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -113,7 +119,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsAdvect.html b/docs/doxygen/html/classlsAdvect.html index 7f8c3134..8c5ac2f0 100644 --- a/docs/doxygen/html/classlsAdvect.html +++ b/docs/doxygen/html/classlsAdvect.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsAdvect< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -88,7 +94,7 @@
    -

    This class is used to advance level sets over time. Level sets are passed to the constructor in an std::vector, with the last element being the level set to advect, or "top level set", while the others are then adjusted afterwards. In order to ensure that advection works correctly, the "top level set" has to include all lower level sets: LS_top = LS_top U LS_i for i = {0 ... n}, where n is the number of level sets. The velocities used to advect the level set are given in a concrete implementation of the lsVelocityField (check Advection examples for guidance) +

    This class is used to advance level sets over time. Level sets are passed to the constructor in an std::vector, with the last element being the level set to advect, or "top level set", while the others are then adjusted afterwards. In order to ensure that advection works correctly, the "top level set" has to include all lower level sets: LS_top = LS_top U LS_i for i = {0 ... n}, where n is the number of level sets. The velocities used to advect the level set are given in a concrete implementation of the lsVelocityField (check Advection examples for guidance) More...

    #include <lsAdvect.hpp>

    @@ -109,56 +115,57 @@  lsAdvect (std::vector< lsSmartPointer< lsDomain< T, D >>> passedlsDomains, lsSmartPointer< VelocityField > passedVelocities)   void insertNextLevelSet (lsSmartPointer< lsDomain< T, D >> passedlsDomain) - Pushes the passed level set to the back of the list of level sets used for advection. More...
    + Pushes the passed level set to the back of the list of level sets used for advection. More...
      template<class VelocityField > void setVelocityField (lsSmartPointer< VelocityField > passedVelocities) - Set the velocity field used for advection. This should be a concrete implementation of lsVelocityField. More...
    + Set the velocity field used for advection. This should be a concrete implementation of lsVelocityField. More...
      void setAdvectionTime (double time) - Set the time until when the level set should be advected. If this takes more than one advection step, multiple will be performed. Defaults to 0, which means one advection step with the maximum time step possible according to the CFL condition(see setTimeStepRatio) will be performed. More...
    + Set the time until when the level set should be advected. If this takes more than one advection step, multiple will be performed. Defaults to 0, which means one advection step with the maximum time step possible according to the CFL condition(see setTimeStepRatio) will be performed. More...
      void setTimeStepRatio (const double &cfl) - Set the CFL condition to use during advection. The CFL condition sets the maximum distance a surface can be moved during one advection step. It MUST be below 0.5 to guarantee numerical stability. Defaults to 0.4999. More...
    + Set the CFL condition to use during advection. The CFL condition sets the maximum distance a surface can be moved during one advection step. It MUST be below 0.5 to guarantee numerical stability. Defaults to 0.4999. More...
      void setCalculateNormalVectors (bool cnv) - Set whether normal vectors should be calculated at each level set point. Defaults to true. If normal vectors are not required for velocity calculation, this can be set to false, in order to increase computational efficiency. More...
    + Set whether normal vectors should be calculated at each level set point. Defaults to true. If normal vectors are not required for velocity calculation, this can be set to false, in order to increase computational efficiency. More...
      void setIgnoreVoids (bool iV) - Set whether level set values, which are not part of the "top" geometrically connected part of values, should be advected. The "top" part is identified by the most positive part in the lowest dimension with INFINITE boundary conditions. Defaults to false. If set to true, only the "top" values will be advected. All others values are not changed. More...
    + Set whether level set values, which are not part of the "top" geometrically connected part of values, should be advected. The "top" part is identified by the most positive part in the lowest dimension with INFINITE boundary conditions. Defaults to false. If set to true, only the "top" values will be advected. All others values are not changed. More...
      void setSaveAdvectionVelocities (bool sAV) - Set whether the velocities applied to each point should be saved in the level set for debug purposes. More...
    + Set whether the velocities applied to each point should be saved in the level set for debug purposes. More...
      double getAdvectedTime () - Get by how much the physical time was advanced during the last apply() call. More...
    + Get by how much the physical time was advanced during the last apply() call. More...
      unsigned getNumberOfTimeSteps () - Get how many advection steps were performed during the last apply() call. More...
    + Get how many advection steps were performed during the last apply() call. More...
      double getTimeStepRatio () - Get the value of the CFL number. More...
    + Get the value of the CFL number. More...
      bool getCalculateNormalVectors () - Get whether normal vectors were caluclated. More...
    + Get whether normal vectors were caluclated. More...
      void setIntegrationScheme (lsIntegrationSchemeEnum scheme) - Set which integration scheme should be used out of the ones specified in lsIntegrationSchemeEnum. More...
    + Set which integration scheme should be used out of the ones specified in lsIntegrationSchemeEnum. More...
      void setDissipationAlpha (const double &a) - Set the alpha dissipation coefficient. For lsLaxFriedrichs, this is used as the alpha value. For all other LaxFriedrichs schemes it is used as a scaling factor for the calculated alpha values. More...
    + Set the alpha dissipation coefficient. For lsLaxFriedrichs, this is used as the alpha value. For all other LaxFriedrichs schemes it is used as a scaling factor for the calculated alpha values. More...
      void apply () - Perform the advection. More...
    + Perform the advection. More...
     

    Detailed Description

    template<class T, int D>
    class lsAdvect< T, D >

    -

    This class is used to advance level sets over time. Level sets are passed to the constructor in an std::vector, with the last element being the level set to advect, or "top level set", while the others are then adjusted afterwards. In order to ensure that advection works correctly, the "top level set" has to include all lower level sets: LS_top = LS_top U LS_i for i = {0 ... n}, where n is the number of level sets. The velocities used to advect the level set are given in a concrete implementation of the lsVelocityField (check Advection examples for guidance)

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    -

    Constructor & Destructor Documentation

    +

    This class is used to advance level sets over time. Level sets are passed to the constructor in an std::vector, with the last element being the level set to advect, or "top level set", while the others are then adjusted afterwards. In order to ensure that advection works correctly, the "top level set" has to include all lower level sets: LS_top = LS_top U LS_i for i = {0 ... n}, where n is the number of level sets. The velocities used to advect the level set are given in a concrete implementation of the lsVelocityField (check Advection examples for guidance)

    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsAdvect() [1/5]

    @@ -379,7 +386,7 @@

    -

    Get by how much the physical time was advanced during the last apply() call.

    +

    Get by how much the physical time was advanced during the last apply() call.

    @@ -437,7 +444,7 @@

    -

    Get how many advection steps were performed during the last apply() call.

    +

    Get how many advection steps were performed during the last apply() call.

    @@ -738,7 +745,7 @@

    -

    Set the velocity field used for advection. This should be a concrete implementation of lsVelocityField.

    +

    Set the velocity field used for advection. This should be a concrete implementation of lsVelocityField.

    @@ -753,7 +760,7 @@

    lsAdvect
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsBooleanOperation-members.html b/docs/doxygen/html/classlsBooleanOperation-members.html index 86648b38..0d731695 100644 --- a/docs/doxygen/html/classlsBooleanOperation-members.html +++ b/docs/doxygen/html/classlsBooleanOperation-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -102,7 +108,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsBooleanOperation.html b/docs/doxygen/html/classlsBooleanOperation.html index 8ce1cfa2..4fe590e7 100644 --- a/docs/doxygen/html/classlsBooleanOperation.html +++ b/docs/doxygen/html/classlsBooleanOperation.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsBooleanOperation< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -102,19 +108,19 @@  lsBooleanOperation (lsSmartPointer< lsDomain< T, D >> passedlsDomainA, lsSmartPointer< lsDomain< T, D >> passedlsDomainB, lsBooleanOperationEnum passedOperation=lsBooleanOperationEnum::INTERSECT)   void setLevelSet (lsSmartPointer< lsDomain< T, D >> passedlsDomain) - set which level set to perform the boolean operation on More...
    + set which level set to perform the boolean operation on More...
      void setSecondLevelSet (lsSmartPointer< lsDomain< T, D >> passedlsDomain) - set the level set which will be used to modify the first level set More...
    + set the level set which will be used to modify the first level set More...
      void setBooleanOperation (lsBooleanOperationEnum passedOperation) - set which of the operations of lsBooleanOperationEnum to perform More...
    + set which of the operations of lsBooleanOperationEnum to perform More...
      void setBooleanOperationComparator (const T(*passedOperationComp)(const T &, const T &)) - set the comparator to be used when the BooleanOperation is set to CUSTOM More...
    + set the comparator to be used when the BooleanOperation is set to CUSTOM More...
      void apply () - perform operation More...
    + perform operation More...
     

    Detailed Description

    @@ -122,8 +128,9 @@ class lsBooleanOperation< T, D >

    This class is used to perform boolean operations on two level sets and write the resulting level set into the first passed level set. When the boolean operation is set to CUSTOM, a comparator must be set using setBooleanOperationComparator. This comparator returns one value generated from the level set value supplied by each level set. E.g.: for a union, the comparator will always return the smaller of the two values.

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    -

    Constructor & Destructor Documentation

    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsBooleanOperation() [1/3]

    @@ -260,6 +267,8 @@

    perform operation

    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, and SquareEtch.cpp.
    +
    @@ -394,7 +403,7 @@

    lsBooleanOperation
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsBox-members.html b/docs/doxygen/html/classlsBox-members.html index c9640eed..efd47069 100644 --- a/docs/doxygen/html/classlsBox-members.html +++ b/docs/doxygen/html/classlsBox-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsBox.html b/docs/doxygen/html/classlsBox.html index bcf9c3f4..de808a92 100644 --- a/docs/doxygen/html/classlsBox.html +++ b/docs/doxygen/html/classlsBox.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsBox< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -303,7 +309,7 @@

    lsBox
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsBoxDistribution-members.html b/docs/doxygen/html/classlsBoxDistribution-members.html index dfa6339b..aac4d039 100644 --- a/docs/doxygen/html/classlsBoxDistribution-members.html +++ b/docs/doxygen/html/classlsBoxDistribution-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -102,7 +108,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsBoxDistribution.html b/docs/doxygen/html/classlsBoxDistribution.html index ac8d6a25..ef7232f9 100644 --- a/docs/doxygen/html/classlsBoxDistribution.html +++ b/docs/doxygen/html/classlsBoxDistribution.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsBoxDistribution< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,21 +106,21 @@ lsGeometricAdvectDistribution< T, D > - -
    + + - + - + - +

    Public Member Functions

     lsBoxDistribution (const std::array< T, 3 > &halfAxes, const T delta)
     
    bool isInside (const std::array< hrleCoordType, 3 > &initial, const std::array< hrleCoordType, 3 > &candidate, double eps=0.) const
     Quick check whether a point relative to the distributions center is inside the distribution. More...
     Quick check whether a point relative to the distributions center is inside the distribution. More...
     
    T getSignedDistance (const std::array< hrleCoordType, 3 > &initial, const std::array< hrleCoordType, 3 > &candidate) const
     Returns the signed distance of a point relative to the distributions center. This is the signed manhatten distance to the nearest surface point. More...
     Returns the signed distance of a point relative to the distributions center. This is the signed manhatten distance to the nearest surface point. More...
     
    std::array< hrleCoordType, 6 > getBounds () const
     Sets bounds to the bounding box of the distribution. More...
     Sets bounds to the bounding box of the distribution. More...
     

    @@ -334,7 +340,7 @@

    lsBoxDistribution
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsCalculateNormalVectors-members.html b/docs/doxygen/html/classlsCalculateNormalVectors-members.html index e407b0c2..19a2d62c 100644 --- a/docs/doxygen/html/classlsCalculateNormalVectors-members.html +++ b/docs/doxygen/html/classlsCalculateNormalVectors-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -99,7 +105,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsCalculateNormalVectors.html b/docs/doxygen/html/classlsCalculateNormalVectors.html index bd8d4f5d..819a5ce4 100644 --- a/docs/doxygen/html/classlsCalculateNormalVectors.html +++ b/docs/doxygen/html/classlsCalculateNormalVectors.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsCalculateNormalVectors< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -88,7 +94,7 @@
    -

    This algorithm is used to compute the normal vectors for all points with level set values <= 0.5. The result is saved in the lsPointData of the lsDomain and can be retrieved with lsDomain.getPointData().getVectorData("Normals"). Since neighbors in each cartesian direction are necessary for the calculation, the levelset width must be >=3. +

    This algorithm is used to compute the normal vectors for all points with level set values <= 0.5. The result is saved in the lsPointData of the lsDomain and can be retrieved with lsDomain.getPointData().getVectorData("Normals"). Since neighbors in each cartesian direction are necessary for the calculation, the levelset width must be >=3. More...

    #include <lsCalculateNormalVectors.hpp>

    @@ -110,7 +116,7 @@

    template<class T, int D>
    class lsCalculateNormalVectors< T, D >

    -

    This algorithm is used to compute the normal vectors for all points with level set values <= 0.5. The result is saved in the lsPointData of the lsDomain and can be retrieved with lsDomain.getPointData().getVectorData("Normals"). Since neighbors in each cartesian direction are necessary for the calculation, the levelset width must be >=3.

    +

    This algorithm is used to compute the normal vectors for all points with level set values <= 0.5. The result is saved in the lsPointData of the lsDomain and can be retrieved with lsDomain.getPointData().getVectorData("Normals"). Since neighbors in each cartesian direction are necessary for the calculation, the levelset width must be >=3.

    Constructor & Destructor Documentation

    ◆ lsCalculateNormalVectors() [1/2]

    @@ -273,7 +279,7 @@

    lsCalculateNormalVectors
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsCheck-members.html b/docs/doxygen/html/classlsCheck-members.html index 26727593..a34a136f 100644 --- a/docs/doxygen/html/classlsCheck-members.html +++ b/docs/doxygen/html/classlsCheck-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsCheck.html b/docs/doxygen/html/classlsCheck.html index 5fbd6311..58806d91 100644 --- a/docs/doxygen/html/classlsCheck.html +++ b/docs/doxygen/html/classlsCheck.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsCheck< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -232,7 +238,7 @@

    lsCheck
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsConvexHull-members.html b/docs/doxygen/html/classlsConvexHull-members.html index e768c6f6..550d0bd3 100644 --- a/docs/doxygen/html/classlsConvexHull-members.html +++ b/docs/doxygen/html/classlsConvexHull-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -99,7 +105,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsConvexHull.html b/docs/doxygen/html/classlsConvexHull.html index ae5bb9a3..85908f6c 100644 --- a/docs/doxygen/html/classlsConvexHull.html +++ b/docs/doxygen/html/classlsConvexHull.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsConvexHull< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -111,15 +117,16 @@ class lsConvexHull< T, D >

    This algorithm creates a convex hull mesh from a point cloud. This is done using the gift wrapping approach. The points in the point cloud must be unique.

    -
    Examples:
    PatternedSubstrate.cpp.
    -

    Constructor & Destructor Documentation

    +
    Examples
    PatternedSubstrate.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsConvexHull() [1/2]

    -template<class T, int D>
    +template<class T , int D>
    @@ -784,12 +791,12 @@

    -

    get reference to the grid on which the levelset is defined

    +

    get mutable reference to the grid on which the level set is defined

    -     -

    ◆ getGrid() [2/2]

    + +

    ◆ getGrid() [2/2]

    @@ -800,10 +807,10 @@

    @@ -146,7 +153,7 @@

    -template<class T, int D>
    +template<class T , int D>
    - + +
    @@ -185,7 +192,7 @@

    -template<class T, int D>
    +template<class T , int D>
    - + - + - + - + - + - + - + - + - + - + - + @@ -166,23 +172,23 @@ - + - + - + - + - +
    @@ -203,6 +210,8 @@

    +
    Examples
    PatternedSubstrate.cpp.
    +
    @@ -212,7 +221,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -240,7 +249,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -273,7 +282,7 @@

    lsConvexHull
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsDomain-members.html b/docs/doxygen/html/classlsDomain-members.html index c7534f2d..69d6d7cb 100644 --- a/docs/doxygen/html/classlsDomain-members.html +++ b/docs/doxygen/html/classlsDomain-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -131,7 +137,7 @@
    diff --git a/docs/doxygen/html/classlsDomain.html b/docs/doxygen/html/classlsDomain.html index 22f40cea..0cca9963 100644 --- a/docs/doxygen/html/classlsDomain.html +++ b/docs/doxygen/html/classlsDomain.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsDomain< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -117,47 +123,47 @@

    Public Member Functions

     lsDomain (hrleCoordType gridDelta=1.0)
     initalise an empty infinite lsDomain More...
     initalise an empty infinite lsDomain More...
     
     lsDomain (hrleCoordType *bounds, BoundaryType *boundaryConditions, hrleCoordType gridDelta=1.0)
     
     lsDomain (std::vector< hrleCoordType > bounds, std::vector< unsigned > boundaryConditions, hrleCoordType gridDelta=1.0)
     
     lsDomain (PointValueVectorType pointData, hrleCoordType *bounds, BoundaryType *boundaryConditions, hrleCoordType gridDelta=1.0)
     initialise lsDomain with domain size "bounds", filled with point/value pairs in pointData More...
     initialise lsDomain with domain size "bounds", filled with point/value pairs in pointData More...
     
     lsDomain (GridType passedGrid)
     
     lsDomain (lsSmartPointer< lsDomain > passedDomain)
     
    void finalize (int newWidth)
     this function sets a new levelset width and finalizes the levelset, so it is ready for use by other algorithms More...
     this function sets a new levelset width and finalizes the levelset, so it is ready for use by other algorithms More...
     
    void finalize ()
     this function finalizes the levelset, so it is ready for use by other algorithms More...
     this function finalizes the levelset, so it is ready for use by other algorithms More...
     
    void deepCopy (const lsSmartPointer< lsDomain< T, D >> passedlsDomain)
     copy all values of "passedlsDomain" to this lsDomain More...
     copy all values of "passedlsDomain" to this lsDomain More...
     
    void insertPoints (PointValueVectorType pointData, bool sort=true)
     re-initalise lsDomain with the point/value pairs in pointData This is similar to lsFromMesh with the difference that pointData contains (INDEX, Value) pairs, while lsFromMesh expects coordinates rather than indices More...
     re-initalise lsDomain with the point/value pairs in pointData This is similar to lsFromMesh with the difference that pointData contains (INDEX, Value) pairs, while lsFromMesh expects coordinates rather than indices More...
     
    const GridType & getGrid () const
     get reference to the grid on which the levelset is defined More...
     get reference to the grid on which the levelset is defined More...
     
    GridType & getGrid ()
     get mutable reference to the grid on which the level set is defined More...
     get mutable reference to the grid on which the level set is defined More...
     
    DomainType & getDomain ()
     get const reference to the underlying hrleDomain data structure More...
     get const reference to the underlying hrleDomain data structure More...
     
    const DomainType & getDomain () const
     
    unsigned getNumberOfSegments () const
     returns the number of segments, the levelset is split into. This is useful for algorithm parallelisation More...
     returns the number of segments, the levelset is split into. This is useful for algorithm parallelisation More...
     
    unsigned getNumberOfPoints () const
     returns the number of defined points More...
     returns the number of defined points More...
     
    int getLevelSetWidth () const
     
    void clearMetaData ()
     
    PointDataType & getPointData ()
     get reference to point data saved in the level set More...
     get reference to point data saved in the level set More...
     
    const PointDataType & getPointData () const
     
    VoidPointMarkersType & getVoidPointMarkers ()
     get reference to the voidPoints markers for all points More...
     get reference to the voidPoints markers for all points More...
     
    const VoidPointMarkersType & getVoidPointMarkers () const
     
    void print ()
     prints basic information and all memebers of the levelset structure More...
     prints basic information and all memebers of the levelset structure More...
     
    std::ostream & serialize (std::ostream &stream)
     Serializes the lsDomain into a binary stream. More...
     Serializes the lsDomain into a binary stream. More...
     
    std::istream & deserialize (std::istream &stream)
     Deserialize lsDomain from binary stream. More...
     Deserialize lsDomain from binary stream. More...
     
    - - +

    @@ -199,8 +205,9 @@ class lsDomain< T, D >

    Class containing all information about the level set, including the dimensions of the domain, boundary conditions and all data.

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    -

    Member Typedef Documentation

    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    +

    Member Typedef Documentation

    ◆ BoundaryType

    @@ -356,7 +363,7 @@

    -

    initalise an empty infinite lsDomain

    +

    initalise an empty infinite lsDomain

    @@ -496,7 +503,7 @@

    -

    initialise lsDomain with domain size "bounds", filled with point/value pairs in pointData

    +

    initialise lsDomain with domain size "bounds", filled with point/value pairs in pointData

    @@ -610,7 +617,7 @@

    -

    copy all values of "passedlsDomain" to this lsDomain

    +

    copy all values of "passedlsDomain" to this lsDomain

    @@ -640,12 +647,12 @@

    -

    Deserialize lsDomain from binary stream.

    +

    Deserialize lsDomain from binary stream.

    - -

    ◆ finalize() [1/2]

    + +

    ◆ finalize() [1/2]

    @@ -658,8 +665,7 @@

    void lsDomain< T, D >::finalize

    		(int newWidth))
    @@ -670,12 +676,12 @@

    -

    this function sets a new levelset width and finalizes the levelset, so it is ready for use by other algorithms

    +

    this function finalizes the levelset, so it is ready for use by other algorithms

    -     -

    ◆ finalize() [2/2]

    + +

    ◆ finalize() [2/2]

    @@ -688,7 +694,8 @@

    void lsDomain< T, D >::finalize

    		()int newWidth)
    @@ -699,7 +706,7 @@

    -

    this function finalizes the levelset, so it is ready for use by other algorithms

    +

    this function sets a new levelset width and finalizes the levelset, so it is ready for use by other algorithms

    @@ -759,8 +766,8 @@

    -

    ◆ getGrid() [1/2]

    + +

    ◆ getGrid() [1/2]

    @@ -771,10 +778,10 @@

    - + - +
    const GridType& lsDomain< T, D >::getGrid GridType& lsDomain< T, D >::getGrid ( ) const

    - + - +
    GridType& lsDomain< T, D >::getGrid const GridType& lsDomain< T, D >::getGrid ( ) const
    @@ -813,7 +820,7 @@

    -

    get mutable reference to the grid on which the level set is defined

    +

    get reference to the grid on which the levelset is defined

    @@ -1050,7 +1057,7 @@

    -

    re-initalise lsDomain with the point/value pairs in pointData This is similar to lsFromMesh with the difference that pointData contains (INDEX, Value) pairs, while lsFromMesh expects coordinates rather than indices

    +

    re-initalise lsDomain with the point/value pairs in pointData This is similar to lsFromMesh with the difference that pointData contains (INDEX, Value) pairs, while lsFromMesh expects coordinates rather than indices

    @@ -1109,7 +1116,7 @@

    -

    Serializes the lsDomain into a binary stream.

    +

    Serializes the lsDomain into a binary stream.

    @@ -1159,7 +1166,7 @@

    -static +staticconstexpr
    @@ -1183,7 +1190,7 @@

    -static +staticconstexpr

    @@ -1207,7 +1214,7 @@

    -static +staticconstexpr

    @@ -1225,7 +1232,7 @@

    lsDomain
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsDomain.js b/docs/doxygen/html/classlsDomain.js index 92198d4a..81b0687e 100644 --- a/docs/doxygen/html/classlsDomain.js +++ b/docs/doxygen/html/classlsDomain.js @@ -17,12 +17,12 @@ var classlsDomain = [ "clearMetaData", "classlsDomain.html#a335f146054c0610326fc51436ae620bc", null ], [ "deepCopy", "classlsDomain.html#a8f855d161aa1b576e1464797bb833b82", null ], [ "deserialize", "classlsDomain.html#a73014e5d51f5a3162d0009d56e5a5f33", null ], - [ "finalize", "classlsDomain.html#a413380ae4d497ab06c56e28aaea6c2ce", null ], [ "finalize", "classlsDomain.html#ad3d4f7ece6737806c42f642aa42d8309", null ], + [ "finalize", "classlsDomain.html#a413380ae4d497ab06c56e28aaea6c2ce", null ], [ "getDomain", "classlsDomain.html#abcc443a9e4a28b3f85d517b5c933da39", null ], [ "getDomain", "classlsDomain.html#a85a7820776151da133a63602909b2701", null ], - [ "getGrid", "classlsDomain.html#a1b8d18c724f766b6d89b421c130544a3", null ], [ "getGrid", "classlsDomain.html#a17da935be733bf5d51f11a5c5b8c25ae", null ], + [ "getGrid", "classlsDomain.html#a1b8d18c724f766b6d89b421c130544a3", null ], [ "getLevelSetWidth", "classlsDomain.html#a7c41c369debd2f5eeddfc7d4586d7116", null ], [ "getNumberOfPoints", "classlsDomain.html#aeaedf9b83e01197f5e1ccf744364f25e", null ], [ "getNumberOfSegments", "classlsDomain.html#a392c3fcfc0a5c09d19cc1c319c49e49d", null ], diff --git a/docs/doxygen/html/classlsExpand-members.html b/docs/doxygen/html/classlsExpand-members.html index d9def925..7f4e29e8 100644 --- a/docs/doxygen/html/classlsExpand-members.html +++ b/docs/doxygen/html/classlsExpand-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsExpand.html b/docs/doxygen/html/classlsExpand.html index d4697d1b..460e5671 100644 --- a/docs/doxygen/html/classlsExpand.html +++ b/docs/doxygen/html/classlsExpand.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsExpand< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -104,10 +110,10 @@ void setLevelSet (lsSmartPointer< lsDomain< T, D >> passedlsDomain)   void setWidth (int passedWidth) - Set how far the level set should be extended. Points with value width*0.5 will be added by this algorithm. More...
    + Set how far the level set should be extended. Points with value width*0.5 will be added by this algorithm. More...
      void apply () - Apply the expansion to the specified width. More...
    + Apply the expansion to the specified width. More...
     

    Detailed Description

    @@ -308,7 +314,7 @@

    lsExpand
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsFromMesh-members.html b/docs/doxygen/html/classlsFromMesh-members.html index fcc06327..75ea07a8 100644 --- a/docs/doxygen/html/classlsFromMesh-members.html +++ b/docs/doxygen/html/classlsFromMesh-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsFromMesh.html b/docs/doxygen/html/classlsFromMesh.html index e3cfea8d..7263265c 100644 --- a/docs/doxygen/html/classlsFromMesh.html +++ b/docs/doxygen/html/classlsFromMesh.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsFromMesh< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -88,7 +94,7 @@
    -

    Import the regular grid, on which the level set values are defined, from an explicit lsMesh. The Vertices must be defined, as well as a scalar data field "LSValues". If used for custom read-in, make sure all vertices are lexicographically sorted. +

    Import the regular grid, on which the level set values are defined, from an explicit lsMesh. The Vertices must be defined, as well as a scalar data field "LSValues". If used for custom read-in, make sure all vertices are lexicographically sorted. More...

    #include <lsFromMesh.hpp>

    @@ -112,7 +118,7 @@

    template<class T, int D>
    class lsFromMesh< T, D >

    -

    Import the regular grid, on which the level set values are defined, from an explicit lsMesh. The Vertices must be defined, as well as a scalar data field "LSValues". If used for custom read-in, make sure all vertices are lexicographically sorted.

    +

    Import the regular grid, on which the level set values are defined, from an explicit lsMesh. The Vertices must be defined, as well as a scalar data field "LSValues". If used for custom read-in, make sure all vertices are lexicographically sorted.

    Constructor & Destructor Documentation

    ◆ lsFromMesh() [1/2]

    @@ -302,7 +308,7 @@

    lsFromMesh
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsFromSurfaceMesh-members.html b/docs/doxygen/html/classlsFromSurfaceMesh-members.html index ab7e2555..8bb3dbc1 100644 --- a/docs/doxygen/html/classlsFromSurfaceMesh-members.html +++ b/docs/doxygen/html/classlsFromSurfaceMesh-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsFromSurfaceMesh.html b/docs/doxygen/html/classlsFromSurfaceMesh.html index c837db10..b462bc52 100644 --- a/docs/doxygen/html/classlsFromSurfaceMesh.html +++ b/docs/doxygen/html/classlsFromSurfaceMesh.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsFromSurfaceMesh< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -105,7 +111,7 @@ void setMesh (lsSmartPointer< lsMesh > passedMesh)   void setRemoveBoundaryTriangles (bool passedRemoveBoundaryTriangles) - Set whether all triangles outside of the domain should be ignored (=true) or whether boundary conditions should be applied correctly to such triangles(=false). Defaults to true. More...
    + Set whether all triangles outside of the domain should be ignored (=true) or whether boundary conditions should be applied correctly to such triangles(=false). Defaults to true. More...
      void apply ()   @@ -115,15 +121,16 @@ class lsFromSurfaceMesh< T, D >

    Construct a level set from an explicit mesh.

    -
    Examples:
    PatternedSubstrate.cpp.
    -

    Constructor & Destructor Documentation

    +
    Examples
    PatternedSubstrate.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsFromSurfaceMesh() [1/2]

    -template<class T, int D>
    +template<class T , int D>
    @@ -150,7 +157,7 @@

    -template<class T, int D>
    +template<class T , int D>
    - + @@ -436,7 +442,7 @@

    lsInternal
  • lsFiniteDifferences
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsInternal_1_1lsGraph-members.html b/docs/doxygen/html/classlsInternal_1_1lsGraph-members.html index 2c1324aa..bead0d8b 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsGraph-members.html +++ b/docs/doxygen/html/classlsInternal_1_1lsGraph-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    @@ -195,7 +202,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -213,6 +220,8 @@

    +
    Examples
    PatternedSubstrate.cpp.
    +
    @@ -222,7 +231,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -250,7 +259,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -278,7 +287,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -313,7 +322,7 @@

    lsFromSurfaceMesh
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsFromSurfaceMesh_1_1box_1_1iterator-members.html b/docs/doxygen/html/classlsFromSurfaceMesh_1_1box_1_1iterator-members.html index 07918113..142a20d6 100644 --- a/docs/doxygen/html/classlsFromSurfaceMesh_1_1box_1_1iterator-members.html +++ b/docs/doxygen/html/classlsFromSurfaceMesh_1_1box_1_1iterator-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -99,7 +105,7 @@
    diff --git a/docs/doxygen/html/classlsFromSurfaceMesh_1_1box_1_1iterator.html b/docs/doxygen/html/classlsFromSurfaceMesh_1_1box_1_1iterator.html index c6dd6380..4e6c4b47 100644 --- a/docs/doxygen/html/classlsFromSurfaceMesh_1_1box_1_1iterator.html +++ b/docs/doxygen/html/classlsFromSurfaceMesh_1_1box_1_1iterator.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsFromSurfaceMesh< T, D >::box::iterator Class Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -118,7 +124,7 @@

    -template<class T, int D>
    +template<class T , int D>
    - + - +
    @@ -147,7 +153,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -174,7 +180,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -201,7 +207,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -228,7 +234,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -261,7 +267,7 @@

    lsFromSurfaceMesh
  • box
  • iterator
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsFromVolumeMesh-members.html b/docs/doxygen/html/classlsFromVolumeMesh-members.html index 442ccf7e..272e5ddc 100644 --- a/docs/doxygen/html/classlsFromVolumeMesh-members.html +++ b/docs/doxygen/html/classlsFromVolumeMesh-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
    diff --git a/docs/doxygen/html/classlsFromVolumeMesh.html b/docs/doxygen/html/classlsFromVolumeMesh.html index 29740276..227b4257 100644 --- a/docs/doxygen/html/classlsFromVolumeMesh.html +++ b/docs/doxygen/html/classlsFromVolumeMesh.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsFromVolumeMesh< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -308,7 +314,7 @@

    lsFromVolumeMesh
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsGeometricAdvect-members.html b/docs/doxygen/html/classlsGeometricAdvect-members.html index e5205d97..c33602bb 100644 --- a/docs/doxygen/html/classlsGeometricAdvect-members.html +++ b/docs/doxygen/html/classlsGeometricAdvect-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -99,7 +105,7 @@
    diff --git a/docs/doxygen/html/classlsGeometricAdvect.html b/docs/doxygen/html/classlsGeometricAdvect.html index fe0fddc5..8fbf8852 100644 --- a/docs/doxygen/html/classlsGeometricAdvect.html +++ b/docs/doxygen/html/classlsGeometricAdvect.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsGeometricAdvect< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -104,10 +110,10 @@

     
    template<class DistType >
    void setAdvectionDistribution (lsSmartPointer< DistType > passedDist)
     Set which advection distribution to use. Must be derived from lsGeometricAdvectDistribution. More...
     Set which advection distribution to use. Must be derived from lsGeometricAdvectDistribution. More...
     
    void apply ()
     Perform geometrical advection. More...
     Perform geometrical advection. More...
     

    Detailed Description

    @@ -115,15 +121,16 @@ class lsGeometricAdvect< T, D >

    This class advects the level set according to a given distribution. This distribution is overlayed at every grid point of the old surface. All cells within this distribution are then filled, with cells at the edge marked with the correct level set values. Therefore, the surface can be shifted long distances in one step. This algorithm is therefore preferable to normal advection if there is growth/reduction by a geometric directional distribution.

    -
    Examples:
    GeometricAdvection.cpp.
    -

    Constructor & Destructor Documentation

    +
    Examples
    GeometricAdvection.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsGeometricAdvect() [1/2]

    -template<class T, int D>
    +template<class T , int D>
    @@ -150,7 +157,7 @@

    -template<class T, int D>
    +template<class T , int D>
    template<class DistType >
    @@ -191,7 +198,7 @@

    -template<class T, int D>
    +template<class T , int D>

    @@ -211,6 +218,8 @@

    Perform geometrical advection.

    +
    Examples
    GeometricAdvection.cpp.
    +
    @@ -220,7 +229,7 @@

    -template<class T, int D>
    +template<class T , int D>
    template<class DistType >
    @@ -252,7 +261,7 @@

    -template<class T, int D>
    +template<class T , int D>

    @@ -285,7 +294,7 @@

    lsGeometricAdvect
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsGeometricAdvectDistribution-members.html b/docs/doxygen/html/classlsGeometricAdvectDistribution-members.html index 4de47c80..031f1810 100644 --- a/docs/doxygen/html/classlsGeometricAdvectDistribution-members.html +++ b/docs/doxygen/html/classlsGeometricAdvectDistribution-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -99,7 +105,7 @@
    diff --git a/docs/doxygen/html/classlsGeometricAdvectDistribution.html b/docs/doxygen/html/classlsGeometricAdvectDistribution.html index edbda726..ce245081 100644 --- a/docs/doxygen/html/classlsGeometricAdvectDistribution.html +++ b/docs/doxygen/html/classlsGeometricAdvectDistribution.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsGeometricAdvectDistribution< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -98,23 +104,23 @@
    -lsBoxDistribution< T, D > -lsSphereDistribution< T, D > - -
    +lsBoxDistribution< T, D > +lsSphereDistribution< T, D > + + - + - + - + @@ -312,7 +318,7 @@

    lsGeometricAdvectDistribution
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsInternal_1_1lsEnquistOsher-members.html b/docs/doxygen/html/classlsInternal_1_1lsEnquistOsher-members.html index 61af9cfd..7f143e6c 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsEnquistOsher-members.html +++ b/docs/doxygen/html/classlsInternal_1_1lsEnquistOsher-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    Public Member Functions

     lsGeometricAdvectDistribution ()
     
    virtual bool isInside (const std::array< hrleCoordType, 3 > &initial, const std::array< hrleCoordType, 3 > &candidate, double eps=0.) const =0
     Quick check whether a point relative to the distributions center is inside the distribution. More...
     Quick check whether a point relative to the distributions center is inside the distribution. More...
     
    virtual T getSignedDistance (const std::array< hrleCoordType, 3 > &initial, const std::array< hrleCoordType, 3 > &candidate) const =0
     Returns the signed distance of a point relative to the distributions center. This is the signed manhatten distance to the nearest surface point. More...
     Returns the signed distance of a point relative to the distributions center. This is the signed manhatten distance to the nearest surface point. More...
     
    virtual std::array< hrleCoordType, 6 > getBounds () const =0
     Sets bounds to the bounding box of the distribution. More...
     Sets bounds to the bounding box of the distribution. More...
     
    virtual ~lsGeometricAdvectDistribution ()
     
     - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -97,7 +103,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsInternal_1_1lsEnquistOsher.html b/docs/doxygen/html/classlsInternal_1_1lsEnquistOsher.html index 90ee96f5..c48c690b 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsEnquistOsher.html +++ b/docs/doxygen/html/classlsInternal_1_1lsEnquistOsher.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsInternal::lsEnquistOsher< T, D, order > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -234,7 +240,7 @@

    lsInternal
  • lsEnquistOsher
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsInternal_1_1lsFiniteDifferences-members.html b/docs/doxygen/html/classlsInternal_1_1lsFiniteDifferences-members.html index 8e633f50..2eb3ed41 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsFiniteDifferences-members.html +++ b/docs/doxygen/html/classlsInternal_1_1lsFiniteDifferences-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@
    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -102,7 +108,7 @@
    diff --git a/docs/doxygen/html/classlsInternal_1_1lsFiniteDifferences.html b/docs/doxygen/html/classlsInternal_1_1lsFiniteDifferences.html index d3020b1f..959a5163 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsFiniteDifferences.html +++ b/docs/doxygen/html/classlsInternal_1_1lsFiniteDifferences.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsInternal::lsFiniteDifferences< T, scheme > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -101,7 +107,7 @@

    static unsigned getNumberOfValues (DifferentiationSchemeEnum s)
     
    static T weno3 (const T *x, T delta, bool plus, T eps=1e-6)
     Weighted essentially non-oscillatory differentiation scheme 3rd order x1 ... x5 stencil points from left to right plus == true => right-sided. More...
     Weighted essentially non-oscillatory differentiation scheme 3rd order x1 ... x5 stencil points from left to right plus == true => right-sided. More...
     
    static T weno5 (const T *x, T dx, bool plus, T eps=1e-6)
     
     - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsInternal_1_1lsGraph.html b/docs/doxygen/html/classlsInternal_1_1lsGraph.html index aef5feb0..1390b711 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsGraph.html +++ b/docs/doxygen/html/classlsInternal_1_1lsGraph.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsInternal::lsGraph Class Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -93,10 +99,10 @@

    Public Member Functions

    std::size_t insertNextVertex () - add new vertex More...
    + add new vertex More...
      void insertNextEdge (std::size_t vertex1, std::size_t vertex2) - add connection of vertex1 to vertex2 More...
    + add connection of vertex1 to vertex2 More...
      std::vector< int > getConnectedComponents ()   @@ -230,7 +236,7 @@

    lsInternal
  • lsGraph
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsInternal_1_1lsLaxFriedrichs-members.html b/docs/doxygen/html/classlsInternal_1_1lsLaxFriedrichs-members.html index ceae7577..5147e0ea 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsLaxFriedrichs-members.html +++ b/docs/doxygen/html/classlsInternal_1_1lsLaxFriedrichs-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -97,7 +103,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsInternal_1_1lsLaxFriedrichs.html b/docs/doxygen/html/classlsInternal_1_1lsLaxFriedrichs.html index ee0f02df..b430efa0 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsLaxFriedrichs.html +++ b/docs/doxygen/html/classlsInternal_1_1lsLaxFriedrichs.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsInternal::lsLaxFriedrichs< T, D, order > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -240,7 +246,7 @@

    lsInternal
  • lsLaxFriedrichs
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichs-members.html b/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichs-members.html index 2d713e9b..2eb157ba 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichs-members.html +++ b/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichs-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -97,7 +103,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichs.html b/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichs.html index f6e2dcd8..da08e08c 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichs.html +++ b/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichs.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsInternal::lsLocalLaxFriedrichs< T, D, order > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -89,7 +95,7 @@
    -

    Lax Friedrichs integration scheme, which uses a first neighbour stencil to calculate the alpha values for all neighbours. The largest alpha value is then chosen for dissipation. Slower than lsLocalLocalLaxFriedrichs or lsEngquistOsher but more reliable for complex velocity fields. +

    Lax Friedrichs integration scheme, which uses a first neighbour stencil to calculate the alpha values for all neighbours. The largest alpha value is then chosen for dissipation. Slower than lsLocalLocalLaxFriedrichs or lsEngquistOsher but more reliable for complex velocity fields. More...

    #include <lsLocalLaxFriedrichs.hpp>

    @@ -110,7 +116,7 @@

    template<class T, int D, int order>
    class lsInternal::lsLocalLaxFriedrichs< T, D, order >

    -

    Lax Friedrichs integration scheme, which uses a first neighbour stencil to calculate the alpha values for all neighbours. The largest alpha value is then chosen for dissipation. Slower than lsLocalLocalLaxFriedrichs or lsEngquistOsher but more reliable for complex velocity fields.

    +

    Lax Friedrichs integration scheme, which uses a first neighbour stencil to calculate the alpha values for all neighbours. The largest alpha value is then chosen for dissipation. Slower than lsLocalLocalLaxFriedrichs or lsEngquistOsher but more reliable for complex velocity fields.

    Constructor & Destructor Documentation

    ◆ lsLocalLaxFriedrichs()

    @@ -234,7 +240,7 @@

    lsInternal
  • lsLocalLaxFriedrichs
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichsAnalytical-members.html b/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichsAnalytical-members.html index 2e023745..f48d704d 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichsAnalytical-members.html +++ b/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichsAnalytical-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -97,7 +103,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichsAnalytical.html b/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichsAnalytical.html index 39a66d5d..efcab593 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichsAnalytical.html +++ b/docs/doxygen/html/classlsInternal_1_1lsLocalLaxFriedrichsAnalytical.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsInternal::lsLocalLaxFriedrichsAnalytical< T, D, order > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -89,7 +95,7 @@
    -

    Lax Friedrichs integration scheme, which uses alpha values provided by the user in getDissipationAlphas in lsVelocityField. If it is possible to derive analytical solutions for the velocityField and the alpha values, this integration scheme should be used and never otherwise. +

    Lax Friedrichs integration scheme, which uses alpha values provided by the user in getDissipationAlphas in lsVelocityField. If it is possible to derive analytical solutions for the velocityField and the alpha values, this integration scheme should be used and never otherwise. More...

    #include <lsLocalLaxFriedrichsAnalytical.hpp>

    @@ -110,7 +116,7 @@

    template<class T, int D, int order>
    class lsInternal::lsLocalLaxFriedrichsAnalytical< T, D, order >

    -

    Lax Friedrichs integration scheme, which uses alpha values provided by the user in getDissipationAlphas in lsVelocityField. If it is possible to derive analytical solutions for the velocityField and the alpha values, this integration scheme should be used and never otherwise.

    +

    Lax Friedrichs integration scheme, which uses alpha values provided by the user in getDissipationAlphas in lsVelocityField. If it is possible to derive analytical solutions for the velocityField and the alpha values, this integration scheme should be used and never otherwise.

    Constructor & Destructor Documentation

    ◆ lsLocalLaxFriedrichsAnalytical()

    @@ -224,7 +230,7 @@

    lsInternal
  • lsLocalLaxFriedrichsAnalytical
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsInternal_1_1lsLocalLocalLaxFriedrichs-members.html b/docs/doxygen/html/classlsInternal_1_1lsLocalLocalLaxFriedrichs-members.html index ba6ca333..7a3a8d2e 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsLocalLocalLaxFriedrichs-members.html +++ b/docs/doxygen/html/classlsInternal_1_1lsLocalLocalLaxFriedrichs-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -97,7 +103,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsInternal_1_1lsLocalLocalLaxFriedrichs.html b/docs/doxygen/html/classlsInternal_1_1lsLocalLocalLaxFriedrichs.html index 762ec74e..d3151f55 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsLocalLocalLaxFriedrichs.html +++ b/docs/doxygen/html/classlsInternal_1_1lsLocalLocalLaxFriedrichs.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsInternal::lsLocalLocalLaxFriedrichs< T, D, order > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -234,7 +240,7 @@

    lsInternal
  • lsLocalLocalLaxFriedrichs
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsInternal_1_1lsMarchingCubes-members.html b/docs/doxygen/html/classlsInternal_1_1lsMarchingCubes-members.html index d6afc3f1..617370f8 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsMarchingCubes-members.html +++ b/docs/doxygen/html/classlsInternal_1_1lsMarchingCubes-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -96,7 +102,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsInternal_1_1lsMarchingCubes.html b/docs/doxygen/html/classlsInternal_1_1lsMarchingCubes.html index 3902abac..88a2c9fa 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsMarchingCubes.html +++ b/docs/doxygen/html/classlsInternal_1_1lsMarchingCubes.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsInternal::lsMarchingCubes Class Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -96,10 +102,10 @@

    Public Member Functions

    const int * polygonize2d (unsigned int signs) - signs = signs of the corners in lexicographic order (1bit per corner) More...
    + signs = signs of the corners in lexicographic order (1bit per corner) More...
      const int * polygonize3d (unsigned int signs) - signs = signs of the corners in lexicographic order (1bit per corner) More...
    + signs = signs of the corners in lexicographic order (1bit per corner) More...
     

    Detailed Description

    @@ -172,7 +178,7 @@

    lsInternal
  • lsMarchingCubes
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsInternal_1_1lsStencilLocalLaxFriedrichsScalar-members.html b/docs/doxygen/html/classlsInternal_1_1lsStencilLocalLaxFriedrichsScalar-members.html index 1e29a160..3c772e5c 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsStencilLocalLaxFriedrichsScalar-members.html +++ b/docs/doxygen/html/classlsInternal_1_1lsStencilLocalLaxFriedrichsScalar-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsInternal_1_1lsStencilLocalLaxFriedrichsScalar.html b/docs/doxygen/html/classlsInternal_1_1lsStencilLocalLaxFriedrichsScalar.html index 4ac231e3..b834694e 100644 --- a/docs/doxygen/html/classlsInternal_1_1lsStencilLocalLaxFriedrichsScalar.html +++ b/docs/doxygen/html/classlsInternal_1_1lsStencilLocalLaxFriedrichsScalar.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsInternal::lsStencilLocalLaxFriedrichsScalar< T, D, order > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -269,7 +275,7 @@

    lsInternal
  • lsStencilLocalLaxFriedrichsScalar
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsMakeGeometry-members.html b/docs/doxygen/html/classlsMakeGeometry-members.html index d55bf7d2..c16c3cb1 100644 --- a/docs/doxygen/html/classlsMakeGeometry-members.html +++ b/docs/doxygen/html/classlsMakeGeometry-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@ setGeometry(lsSmartPointer< lsPlane< T, D >> passedPlane)lsMakeGeometry< T, D >inline setGeometry(lsSmartPointer< lsBox< T, D >> passedBox)lsMakeGeometry< T, D >inline setGeometry(lsSmartPointer< lsPointCloud< T, D >> passedPointCloud)lsMakeGeometry< T, D >inline - setIgnoreBoundaryConditions(bool &passedIgnoreBoundaryConditions)lsMakeGeometry< T, D >inline + setIgnoreBoundaryConditions(bool passedIgnoreBoundaryConditions)lsMakeGeometry< T, D >inline setLevelSet(lsSmartPointer< lsDomain< T, D >> passedlsDomain)lsMakeGeometry< T, D >inline
    @@ -107,7 +113,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsMakeGeometry.html b/docs/doxygen/html/classlsMakeGeometry.html index be551a73..c9536795 100644 --- a/docs/doxygen/html/classlsMakeGeometry.html +++ b/docs/doxygen/html/classlsMakeGeometry.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsMakeGeometry< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -110,19 +116,19 @@ void setLevelSet (lsSmartPointer< lsDomain< T, D >> passedlsDomain)   void setGeometry (lsSmartPointer< lsSphere< T, D >> passedSphere) - Set sphere as geometry to be created in the level set. More...
    + Set sphere as geometry to be created in the level set. More...
      void setGeometry (lsSmartPointer< lsPlane< T, D >> passedPlane) - Set a plane to be created in the level set. More...
    + Set a plane to be created in the level set. More...
      void setGeometry (lsSmartPointer< lsBox< T, D >> passedBox) - Set a box to be created in the level set. More...
    + Set a box to be created in the level set. More...
      void setGeometry (lsSmartPointer< lsPointCloud< T, D >> passedPointCloud) - Set a point cloud, which is used to create a geometry from its convex hull. More...
    + Set a point cloud, which is used to create a geometry from its convex hull. More...
      -void setIgnoreBoundaryConditions (bool &passedIgnoreBoundaryConditions) -  +void setIgnoreBoundaryConditions (bool passedIgnoreBoundaryConditions) +  void apply ()   @@ -131,15 +137,16 @@ class lsMakeGeometry< T, D >

    Create level sets describing basic geometric forms.

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    -

    Constructor & Destructor Documentation

    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsMakeGeometry() [1/6]

    -template<class T, int D>
    +template<class T , int D>
    @@ -166,7 +173,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -1334,7 +1340,7 @@

    -

    Serialize lsPointData into a binary stream.

    +

    Serialize lsPointData into a binary stream.

    @@ -1462,7 +1468,7 @@

    lsMesh
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsMesh.js b/docs/doxygen/html/classlsMesh.js index 0c8fc8e5..8eee5ff4 100644 --- a/docs/doxygen/html/classlsMesh.js +++ b/docs/doxygen/html/classlsMesh.js @@ -2,8 +2,8 @@ var classlsMesh = [ [ "ScalarDataType", "classlsMesh.html#a4a7e6df1e02124bf6aeb8eea86266183", null ], [ "VectorDataType", "classlsMesh.html#ad1cafda925e697b552ccfadd4e965734", null ], - [ "append", "classlsMesh.html#a197658654734702984728ca31cc9e975", null ], [ "append", "classlsMesh.html#ae24b222a26c0706bc6a02e75ce3044b4", null ], + [ "append", "classlsMesh.html#a197658654734702984728ca31cc9e975", null ], [ "clear", "classlsMesh.html#a88e396f7712171b58a932463ecdd4843", null ], [ "deserialize", "classlsMesh.html#a68f5389c5c95019ba65cdd34729791c1", null ], [ "empty", "classlsMesh.html#ae074c8aa7ac4bdb5def8046dfe2f575f", null ], @@ -12,8 +12,8 @@ var classlsMesh = [ "getElements", "classlsMesh.html#aa39589d7fab800bb8320476a9368bea3", null ], [ "getElements", "classlsMesh.html#aa39589d7fab800bb8320476a9368bea3", null ], [ "getElements", "classlsMesh.html#aa39589d7fab800bb8320476a9368bea3", null ], - [ "getNodes", "classlsMesh.html#a7533a162ade9e6955e90462240989301", null ], [ "getNodes", "classlsMesh.html#a77b4f087640c3c0fdf66c9ce6c6ae1f7", null ], + [ "getNodes", "classlsMesh.html#a7533a162ade9e6955e90462240989301", null ], [ "getScalarData", "classlsMesh.html#a456aa18530cd3ed64ae35d1891bde290", null ], [ "getScalarData", "classlsMesh.html#a144a3249a9b65ba1f47a3d7abb778ed2", null ], [ "getScalarData", "classlsMesh.html#a416e6e1e3671bae2c3c99eae206b5e4f", null ], diff --git a/docs/doxygen/html/classlsMessage-members.html b/docs/doxygen/html/classlsMessage-members.html index 6652cd58..9e0729c7 100644 --- a/docs/doxygen/html/classlsMessage-members.html +++ b/docs/doxygen/html/classlsMessage-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    @@ -194,7 +201,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -559,8 +565,8 @@

    -

    ◆ getNodes() [2/2]

    + +

    ◆ getNodes() [2/2]

    @@ -569,10 +575,10 @@

    @@ -232,7 +239,7 @@

    -template<class T, int D>
    +template<class T , int D>
    +inlineinherited
    @@ -270,7 +277,7 @@

    -template<class T, int D>
    +template<class T , int D>
    +inline
    @@ -308,7 +315,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -347,7 +354,7 @@

    -template<class T, int D>
    +template<class T , int D>
    - + @@ -246,7 +252,7 @@

    lsMarkVoidPoints
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsMesh-members.html b/docs/doxygen/html/classlsMesh-members.html index f23c5c1e..bbc950ee 100644 --- a/docs/doxygen/html/classlsMesh-members.html +++ b/docs/doxygen/html/classlsMesh-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    @@ -365,16 +372,18 @@

    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    - -

    ◆ setGeometry() [1/4]

    + +

    ◆ setGeometry() [1/4]

    -template<class T, int D>
    +template<class T , int D>
    - - + +
    @@ -382,8 +391,8 @@

    void lsMakeGeometry< T, D >::setGeometry

    		(lsSmartPointer< lsSphere< T, D >> passedSphere)lsSmartPointer< lsBox< T, D >> passedBox)
    @@ -394,7 +403,7 @@

    -

    Set sphere as geometry to be created in the level set.

    +

    Set a box to be created in the level set.

    @@ -404,7 +413,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -428,13 +437,13 @@

    -

    ◆ setGeometry() [3/4]

    + +

    ◆ setGeometry() [3/4]

    -template<class T, int D>
    +template<class T , int D>
    - - + +
    @@ -442,8 +451,8 @@

    void lsMakeGeometry< T, D >::setGeometry

    		(lsSmartPointer< lsBox< T, D >> passedBox)lsSmartPointer< lsPointCloud< T, D >> passedPointCloud)
    @@ -454,17 +463,17 @@

    -

    Set a box to be created in the level set.

    +

    Set a point cloud, which is used to create a geometry from its convex hull.

    - -

    ◆ setGeometry() [4/4]

    + +

    ◆ setGeometry() [4/4]

    -template<class T, int D>
    +template<class T , int D>
    - - + +
    @@ -472,8 +481,8 @@

    void lsMakeGeometry< T, D >::setGeometry

    		(lsSmartPointer< lsPointCloud< T, D >> passedPointCloud)lsSmartPointer< lsSphere< T, D >> passedSphere)
    @@ -484,17 +493,17 @@

    -

    Set a point cloud, which is used to create a geometry from its convex hull.

    +

    Set sphere as geometry to be created in the level set.

    - -

    ◆ setIgnoreBoundaryConditions()

    + +

    ◆ setIgnoreBoundaryConditions()

    -template<class T, int D>
    +template<class T , int D>
    - + @@ -522,7 +531,7 @@

    -template<class T, int D>
    +template<class T , int D>

    @@ -502,7 +511,7 @@

    void lsMakeGeometry< T, D >::setIgnoreBoundaryConditions

    		(bool & bool  passedIgnoreBoundaryConditions)
    @@ -555,7 +564,7 @@

    lsMakeGeometry
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsMakeGeometry.js b/docs/doxygen/html/classlsMakeGeometry.js index 401d859b..8da38ea3 100644 --- a/docs/doxygen/html/classlsMakeGeometry.js +++ b/docs/doxygen/html/classlsMakeGeometry.js @@ -7,10 +7,10 @@ var classlsMakeGeometry = [ "lsMakeGeometry", "classlsMakeGeometry.html#ad2b2c2016a25e7262a97e6976666e830", null ], [ "lsMakeGeometry", "classlsMakeGeometry.html#aa1c8c04abc0b70e706b3aec32147f929", null ], [ "apply", "classlsMakeGeometry.html#a3256e05d1dec7d632f0ea1edef69f7b5", null ], - [ "setGeometry", "classlsMakeGeometry.html#ae8577b91c8f137e21bcd794dfda76b15", null ], - [ "setGeometry", "classlsMakeGeometry.html#a6d81982e885c5c29abdb490b39e85efb", null ], [ "setGeometry", "classlsMakeGeometry.html#a98ff25a424649dabde3d19d8fac3782d", null ], + [ "setGeometry", "classlsMakeGeometry.html#a6d81982e885c5c29abdb490b39e85efb", null ], [ "setGeometry", "classlsMakeGeometry.html#a5a47a33971f2679155076ceb1c861d7b", null ], - [ "setIgnoreBoundaryConditions", "classlsMakeGeometry.html#afeef5677702fcd84172a586da19f49c8", null ], + [ "setGeometry", "classlsMakeGeometry.html#ae8577b91c8f137e21bcd794dfda76b15", null ], + [ "setIgnoreBoundaryConditions", "classlsMakeGeometry.html#a33c32a76da73eb4bb4a8bee39695c680", null ], [ "setLevelSet", "classlsMakeGeometry.html#a2fa82849d0c90c231cab6edfc8fe60cc", null ] ]; \ No newline at end of file diff --git a/docs/doxygen/html/classlsMarkVoidPoints-members.html b/docs/doxygen/html/classlsMarkVoidPoints-members.html index 7da32648..c4545211 100644 --- a/docs/doxygen/html/classlsMarkVoidPoints-members.html +++ b/docs/doxygen/html/classlsMarkVoidPoints-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@
    diff --git a/docs/doxygen/html/classlsMarkVoidPoints.html b/docs/doxygen/html/classlsMarkVoidPoints.html index 9b60a795..cea539cd 100644 --- a/docs/doxygen/html/classlsMarkVoidPoints.html +++ b/docs/doxygen/html/classlsMarkVoidPoints.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsMarkVoidPoints< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@

    void setLevelSet (lsSmartPointer< lsDomain< T, D >> passedlsDomain)
     
    void setReverseVoidDetection (bool passedReverseVoidDetection)
     Set whether the "top" level set should be the most positive(default) connected chain of level set values, or the most negative. Most positive/negative refers to the location in the lowest dimension with INFINITE boundary conditions. More...
     Set whether the "top" level set should be the most positive(default) connected chain of level set values, or the most negative. Most positive/negative refers to the location in the lowest dimension with INFINITE boundary conditions. More...
     
    void apply ()
     
     - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -144,7 +150,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsMesh.html b/docs/doxygen/html/classlsMesh.html index 1d65e757..db2d1639 100644 --- a/docs/doxygen/html/classlsMesh.html +++ b/docs/doxygen/html/classlsMesh.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsMesh Class Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,9 +106,9 @@
    -lsPointData - -
    +lsPointData + + @@ -163,16 +169,16 @@ - + - + - + - + @@ -199,7 +205,7 @@ - + @@ -271,8 +277,8 @@

    Member Function Documentation

    - -

    ◆ append() [1/2]

    + +

    ◆ append() [1/2]

    @@ -281,24 +287,24 @@

    Public Types

    void print ()
     
    void insertNextScalarData (const ScalarDataType &scalars, std::string label="Scalars")
     insert new scalar data array More...
     insert new scalar data array More...
     
    void insertNextVectorData (const VectorDataType &vectors, std::string label="Vectors")
     insert new vector data array More...
     insert new vector data array More...
     
    unsigned getScalarDataSize () const
     get the number of different scalar data arrays saved More...
     get the number of different scalar data arrays saved More...
     
    unsigned getVectorDataSize () const
     get the number of different vector data arrays saved More...
     get the number of different vector data arrays saved More...
     
    ScalarDataType * getScalarData (int index)
     
    bool empty ()
     
    std::ostream & serialize (std::ostream &stream)
     Serialize lsPointData into a binary stream. More...
     Serialize lsPointData into a binary stream. More...
     
    std::istream & deserialize (std::istream &stream)
     
     - + - - + +
    void lsPointData::append void lsMesh::append (const lsPointData & passedData)const lsMesh & passedMesh)

    		-inlineinherited
    -     -

    ◆ append() [2/2]

    + +

    ◆ append() [2/2]

    @@ -307,16 +313,16 @@

    - + - - + +
    void lsMesh::append void lsPointData::append (const lsMesh & passedMesh)const lsPointData & passedData)

    		-inline
    @@ -534,8 +540,8 @@

    -

    ◆ getNodes() [1/2]

    + +

    ◆ getNodes() [1/2]

    @@ -544,10 +550,10 @@

    - + - +
    const std::vector<std::array<double, 3> >& lsMesh::getNodes std::vector<std::array<double, 3> >& lsMesh::getNodes ( ) const

    - + - +
    std::vector<std::array<double, 3> >& lsMesh::getNodes const std::vector<std::array<double, 3> >& lsMesh::getNodes ( ) const

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -101,7 +107,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsMessage.html b/docs/doxygen/html/classlsMessage.html index d71539f9..44ab3c16 100644 --- a/docs/doxygen/html/classlsMessage.html +++ b/docs/doxygen/html/classlsMessage.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsMessage Class Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -320,7 +326,7 @@

    lsMessage
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsPlane-members.html b/docs/doxygen/html/classlsPlane-members.html index 45da1bd9..8818f253 100644 --- a/docs/doxygen/html/classlsPlane-members.html +++ b/docs/doxygen/html/classlsPlane-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsPlane.html b/docs/doxygen/html/classlsPlane.html index 36a241e8..2b953d10 100644 --- a/docs/doxygen/html/classlsPlane.html +++ b/docs/doxygen/html/classlsPlane.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsPlane< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -117,6 +123,8 @@ class lsPlane< T, D >

    Class describing a plane via a point in it and the plane normal.

    +
    Examples
    SquareEtch.cpp.
    +

    Constructor & Destructor Documentation

    ◆ lsPlane() [1/4]

    @@ -303,7 +311,7 @@

    lsPlane
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsPointCloud-members.html b/docs/doxygen/html/classlsPointCloud-members.html index 91227c45..ae9d8bbe 100644 --- a/docs/doxygen/html/classlsPointCloud-members.html +++ b/docs/doxygen/html/classlsPointCloud-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -106,7 +112,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsPointCloud.html b/docs/doxygen/html/classlsPointCloud.html index 2ca64cf6..ec8c5143 100644 --- a/docs/doxygen/html/classlsPointCloud.html +++ b/docs/doxygen/html/classlsPointCloud.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsPointCloud< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -268,8 +274,8 @@

    -

    ◆ insertNextPoint() [1/3]

    + +

    ◆ insertNextPoint() [1/3]

    @@ -282,7 +288,7 @@

    void lsPointCloud< T, D >::insertNextPoint ( - hrleVectorType< T, D >  + const std::vector< T > &  newPoint) @@ -296,8 +302,8 @@

    -

    ◆ insertNextPoint() [2/3]

    + +

    ◆ insertNextPoint() [2/3]

    @@ -310,7 +316,7 @@

    void lsPointCloud< T, D >::insertNextPoint ( - T *  + hrleVectorType< T, D >  newPoint) @@ -324,8 +330,8 @@

    -

    ◆ insertNextPoint() [3/3]

    + +

    ◆ insertNextPoint() [3/3]

    @@ -338,7 +344,7 @@

    void lsPointCloud< T, D >::insertNextPoint ( - const std::vector< T > &  + T *  newPoint) @@ -463,7 +469,7 @@

    lsPointCloud
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsPointCloud.js b/docs/doxygen/html/classlsPointCloud.js index 21515270..892984b2 100644 --- a/docs/doxygen/html/classlsPointCloud.js +++ b/docs/doxygen/html/classlsPointCloud.js @@ -5,9 +5,9 @@ var classlsPointCloud = [ "lsPointCloud", "classlsPointCloud.html#a28cf2f47ab13b6786f42e0b538b64d14", null ], [ "begin", "classlsPointCloud.html#a1fd3b15dcfc6960e9bbf143716b0133e", null ], [ "end", "classlsPointCloud.html#af15ffa623e300f5ced6cc418e0efb7fd", null ], + [ "insertNextPoint", "classlsPointCloud.html#a98602a8018f9325b574a0b0220fb9d1f", null ], [ "insertNextPoint", "classlsPointCloud.html#aa4a02b2fc568419e193e9cc28b356386", null ], [ "insertNextPoint", "classlsPointCloud.html#ae04ce0224a95b6e243094775d3e59f7c", null ], - [ "insertNextPoint", "classlsPointCloud.html#a98602a8018f9325b574a0b0220fb9d1f", null ], [ "insertNextUniquePoint", "classlsPointCloud.html#a15e7080f37532deb90bd6fd112c8aba8", null ], [ "operator[]", "classlsPointCloud.html#aed4c4453c05606e8bc93559b31313855", null ], [ "size", "classlsPointCloud.html#ac78a4af3b7efa9dc2ba1b3eb4873ad3e", null ], diff --git a/docs/doxygen/html/classlsPointData-members.html b/docs/doxygen/html/classlsPointData-members.html index 3ca449d1..5d7d7dbd 100644 --- a/docs/doxygen/html/classlsPointData-members.html +++ b/docs/doxygen/html/classlsPointData-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@
    - + +/* @license-end */

    @@ -62,7 +66,9 @@
    @@ -115,7 +121,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsPointData.html b/docs/doxygen/html/classlsPointData.html index 8ec31c69..7544b2ee 100644 --- a/docs/doxygen/html/classlsPointData.html +++ b/docs/doxygen/html/classlsPointData.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsPointData Class Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@

    @@ -99,9 +105,9 @@
    -lsMesh - -
    +lsMesh + + @@ -113,16 +119,16 @@ - + - + - + - + @@ -151,7 +157,7 @@ - + @@ -704,7 +710,7 @@

    -

    Serialize lsPointData into a binary stream.

    +

    Serialize lsPointData into a binary stream.

    @@ -719,7 +725,7 @@

    lsPointData
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsPrune-members.html b/docs/doxygen/html/classlsPrune-members.html index f0524d44..188a1c2a 100644 --- a/docs/doxygen/html/classlsPrune-members.html +++ b/docs/doxygen/html/classlsPrune-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    Public Types

    Public Member Functions

    void insertNextScalarData (const ScalarDataType &scalars, std::string label="Scalars")
     insert new scalar data array More...
     insert new scalar data array More...
     
    void insertNextVectorData (const VectorDataType &vectors, std::string label="Vectors")
     insert new vector data array More...
     insert new vector data array More...
     
    unsigned getScalarDataSize () const
     get the number of different scalar data arrays saved More...
     get the number of different scalar data arrays saved More...
     
    unsigned getVectorDataSize () const
     get the number of different vector data arrays saved More...
     get the number of different vector data arrays saved More...
     
    ScalarDataType * getScalarData (int index)
     
    bool empty ()
     
    std::ostream & serialize (std::ostream &stream)
     Serialize lsPointData into a binary stream. More...
     Serialize lsPointData into a binary stream. More...
     
    std::istream & deserialize (std::istream &stream)
     
    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsPrune.html b/docs/doxygen/html/classlsPrune.html index 535c3531..174eb18b 100644 --- a/docs/doxygen/html/classlsPrune.html +++ b/docs/doxygen/html/classlsPrune.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsPrune< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -102,7 +108,7 @@ void setLevelSet (lsSmartPointer< lsDomain< T, D >> passedlsDomain)   void apply () - removes all grid points, which do not have at least one opposite signed neighbour returns the number of removed points More...
    + removes all grid points, which do not have at least one opposite signed neighbour returns the number of removed points More...
     

    Detailed Description

    @@ -235,7 +241,7 @@

    lsPrune
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsReader-members.html b/docs/doxygen/html/classlsReader-members.html index 23288e04..47c0e491 100644 --- a/docs/doxygen/html/classlsReader-members.html +++ b/docs/doxygen/html/classlsReader-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsReader.html b/docs/doxygen/html/classlsReader.html index 61bd2cf5..3d71c504 100644 --- a/docs/doxygen/html/classlsReader.html +++ b/docs/doxygen/html/classlsReader.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsReader< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -101,7 +107,7 @@ void setLevelSet (lsSmartPointer< lsDomain< T, D >> passedLevelSet)   void setFileName (std::string passedFileName) - set file name for file to write More...
    + set file name for file to write More...
      void apply ()   @@ -297,7 +303,7 @@

    lsReader
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsReduce-members.html b/docs/doxygen/html/classlsReduce-members.html index be0ac846..dc81abad 100644 --- a/docs/doxygen/html/classlsReduce-members.html +++ b/docs/doxygen/html/classlsReduce-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -101,7 +107,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsReduce.html b/docs/doxygen/html/classlsReduce.html index 58cc1b5b..a3d6a3a6 100644 --- a/docs/doxygen/html/classlsReduce.html +++ b/docs/doxygen/html/classlsReduce.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsReduce< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -88,7 +94,7 @@
    -

    Reduce the level set size to the specified width. This means all level set points with value <= 0.5*width are removed, reducing the memory footprint of the lsDomain. +

    Reduce the level set size to the specified width. This means all level set points with value <= 0.5*width are removed, reducing the memory footprint of the lsDomain. More...

    #include <lsReduce.hpp>

    @@ -104,20 +110,20 @@ void setLevelSet (lsSmartPointer< lsDomain< T, D >> passedlsDomain)   void setWidth (int passedWidth) - Set which level set points should be kept. All points with a level set value >0.5*width will be removed by this algorithm. More...
    + Set which level set points should be kept. All points with a level set value >0.5*width will be removed by this algorithm. More...
      void setNoNewSegment (bool passedNoNewSegment) - Set whether to segment the level set after algorithm is finished. This means points will be evenly distributed across points. Defaults to true. More...
    + Set whether to segment the level set after algorithm is finished. This means points will be evenly distributed across points. Defaults to true. More...
      void apply () - Reduces the leveleSet to the specified number of layers. The largest value in the levelset is thus width*0.5 Returns the number of added points. More...
    + Reduces the leveleSet to the specified number of layers. The largest value in the levelset is thus width*0.5 Returns the number of added points. More...
     

    Detailed Description

    template<class T, int D>
    class lsReduce< T, D >

    -

    Reduce the level set size to the specified width. This means all level set points with value <= 0.5*width are removed, reducing the memory footprint of the lsDomain.

    +

    Reduce the level set size to the specified width. This means all level set points with value <= 0.5*width are removed, reducing the memory footprint of the lsDomain.

    Constructor & Destructor Documentation

    ◆ lsReduce() [1/3]

    @@ -347,7 +353,7 @@

    lsReduce
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16

    diff --git a/docs/doxygen/html/classlsSmartPointer-members.html b/docs/doxygen/html/classlsSmartPointer-members.html index 6149f02a..69a22115 100644 --- a/docs/doxygen/html/classlsSmartPointer-members.html +++ b/docs/doxygen/html/classlsSmartPointer-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -96,7 +102,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsSmartPointer.html b/docs/doxygen/html/classlsSmartPointer.html index 2b3a5021..1f605a16 100644 --- a/docs/doxygen/html/classlsSmartPointer.html +++ b/docs/doxygen/html/classlsSmartPointer.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsSmartPointer< T > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -97,9 +103,7 @@ Inheritance diagram for lsSmartPointer< T >:
    - - - +
    - +

    @@ -112,7 +116,7 @@ Static Public Member Functions

    template<typename... TArgs>
    static lsSmartPointer New (TArgs &&... targs)
     Use this function to create new objects when using ViennaLS. More...
     Use this function to create new objects when using ViennaLS. More...
     

    Detailed Description

    @@ -120,8 +124,9 @@ class lsSmartPointer< T >

    std::shared_ptr wrapper for use with ViennaLS. lsSmartPointers should be created using the function ::New(...). All other interface functions are identical to std::shared_ptr

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    -

    Constructor & Destructor Documentation

    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsSmartPointer()

    @@ -182,8 +187,9 @@

    Use this function to create new objects when using ViennaLS.

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    The documentation for this class was generated from the following file: diff --git a/docs/doxygen/html/classlsSphere-members.html b/docs/doxygen/html/classlsSphere-members.html index 97dc05a5..1c50c9ef 100644 --- a/docs/doxygen/html/classlsSphere-members.html +++ b/docs/doxygen/html/classlsSphere-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsSphere.html b/docs/doxygen/html/classlsSphere.html index 9b5138f7..fd77cf84 100644 --- a/docs/doxygen/html/classlsSphere.html +++ b/docs/doxygen/html/classlsSphere.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsSphere< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -117,6 +123,8 @@ class lsSphere< T, D >

    Class describing a sphere via origin and radius.

    +
    Examples
    VoidEtching.cpp.
    +

    Constructor & Destructor Documentation

    ◆ lsSphere() [1/4]

    @@ -303,7 +311,7 @@

    lsSphere
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsSphereDistribution-members.html b/docs/doxygen/html/classlsSphereDistribution-members.html index 29e488a0..996b9206 100644 --- a/docs/doxygen/html/classlsSphereDistribution-members.html +++ b/docs/doxygen/html/classlsSphereDistribution-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -103,7 +109,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsSphereDistribution.html b/docs/doxygen/html/classlsSphereDistribution.html index 885844a1..109e96b8 100644 --- a/docs/doxygen/html/classlsSphereDistribution.html +++ b/docs/doxygen/html/classlsSphereDistribution.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsSphereDistribution< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,21 +106,21 @@ lsGeometricAdvectDistribution< T, D > - -
    + + - + - + - +

    Public Member Functions

     lsSphereDistribution (const T passedRadius, const T delta)
     
    bool isInside (const std::array< hrleCoordType, 3 > &initial, const std::array< hrleCoordType, 3 > &candidate, double eps=0.) const
     Quick check whether a point relative to the distributions center is inside the distribution. More...
     Quick check whether a point relative to the distributions center is inside the distribution. More...
     
    T getSignedDistance (const std::array< hrleCoordType, 3 > &initial, const std::array< hrleCoordType, 3 > &candidate) const
     Returns the signed distance of a point relative to the distributions center. This is the signed manhatten distance to the nearest surface point. More...
     Returns the signed distance of a point relative to the distributions center. This is the signed manhatten distance to the nearest surface point. More...
     
    std::array< hrleCoordType, 6 > getBounds () const
     Sets bounds to the bounding box of the distribution. More...
     Sets bounds to the bounding box of the distribution. More...
     

    @@ -352,7 +358,7 @@

    lsSphereDistribution
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsToDiskMesh-members.html b/docs/doxygen/html/classlsToDiskMesh-members.html index edcbc304..68380b20 100644 --- a/docs/doxygen/html/classlsToDiskMesh-members.html +++ b/docs/doxygen/html/classlsToDiskMesh-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsToDiskMesh.html b/docs/doxygen/html/classlsToDiskMesh.html index 31486745..9f581c56 100644 --- a/docs/doxygen/html/classlsToDiskMesh.html +++ b/docs/doxygen/html/classlsToDiskMesh.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsToDiskMesh< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -113,15 +119,16 @@ class lsToDiskMesh< T, D >

    This class creates a mesh from the level set with all grid points with a level set value <= 0.5. These grid points are shifted in space towards the direction of their normal vector by grid delta * LS value. Grid delta and the origin grid point are saved for each point. This allows for a simple setup of disks for ray tracing.

    -
    Examples:
    PatternedSubstrate.cpp.
    -

    Constructor & Destructor Documentation

    +
    Examples
    PatternedSubstrate.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsToDiskMesh() [1/2]

    -template<class T, int D>
    +template<class T , int D>
    @@ -148,7 +155,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -193,7 +200,7 @@

    -template<class T, int D>
    +template<class T , int D>
    - + @@ -297,7 +303,7 @@

    lsWriter
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/dir_03680f297d755c096b0a1ead13ee12b7.html b/docs/doxygen/html/dir_03680f297d755c096b0a1ead13ee12b7.html index 8e0b9ca0..fe712dbd 100644 --- a/docs/doxygen/html/dir_03680f297d755c096b0a1ead13ee12b7.html +++ b/docs/doxygen/html/dir_03680f297d755c096b0a1ead13ee12b7.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples Directory Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    @@ -211,6 +218,8 @@

    +
    Examples
    PatternedSubstrate.cpp.
    +
    @@ -220,7 +229,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -248,7 +257,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -276,7 +285,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -309,7 +318,7 @@

    lsToDiskMesh
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsToMesh-members.html b/docs/doxygen/html/classlsToMesh-members.html index 28062801..9a8f164b 100644 --- a/docs/doxygen/html/classlsToMesh-members.html +++ b/docs/doxygen/html/classlsToMesh-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -101,7 +107,7 @@
    diff --git a/docs/doxygen/html/classlsToMesh.html b/docs/doxygen/html/classlsToMesh.html index 8c5f2d34..f6f84ce0 100644 --- a/docs/doxygen/html/classlsToMesh.html +++ b/docs/doxygen/html/classlsToMesh.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsToMesh< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -88,7 +94,7 @@
    -

    Extract the regular grid, on which the level set values are defined, to an explicit lsMesh. The Vertices will contain the level set value stored at its location. (This is very useful for debugging) +

    Extract the regular grid, on which the level set values are defined, to an explicit lsMesh. The Vertices will contain the level set value stored at its location. (This is very useful for debugging) More...

    #include <lsToMesh.hpp>

    @@ -114,16 +120,17 @@

    template<class T, int D>
    class lsToMesh< T, D >

    -

    Extract the regular grid, on which the level set values are defined, to an explicit lsMesh. The Vertices will contain the level set value stored at its location. (This is very useful for debugging)

    -
    Examples:
    AirGapDeposition.cpp, and Deposition.cpp.
    -

    Constructor & Destructor Documentation

    +

    Extract the regular grid, on which the level set values are defined, to an explicit lsMesh. The Vertices will contain the level set value stored at its location. (This is very useful for debugging)

    +
    Examples
    AirGapDeposition.cpp, and Deposition.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsToMesh() [1/2]

    -template<class T, int D>
    +template<class T , int D>
    - + - + - + @@ -114,8 +120,9 @@ class lsVelocityField< T >

    Abstract class defining the interface for the velocity field used during advection using lsAdvect.

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    -

    Constructor & Destructor Documentation

    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsVelocityField()

    @@ -214,6 +221,8 @@

    If lsLocalLaxFriedrichsAnalytical is used as the advection scheme, this is called to provide the analytical solution for the alpha values, needed for stable integration.

    +
    Examples
    SquareEtch.cpp.
    +
    @@ -260,8 +269,9 @@

    Should return a scalar value for the velocity at coordinate for a point of material with the given normalVector.

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    + @@ -307,8 +317,9 @@

    Like getScalarVelocity, but returns a velocity value for each cartesian direction.

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, and VoidEtching.cpp.
    +
    The documentation for this class was generated from the following file: diff --git a/docs/doxygen/html/classlsWriter-members.html b/docs/doxygen/html/classlsWriter-members.html index 0b270c52..4f7aec08 100644 --- a/docs/doxygen/html/classlsWriter-members.html +++ b/docs/doxygen/html/classlsWriter-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    @@ -150,7 +157,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -201,7 +208,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -219,6 +226,8 @@

    +
    Examples
    AirGapDeposition.cpp, and Deposition.cpp.
    +
    @@ -228,7 +237,7 @@

    -template<class T, int D>
    +template<class T , int D>
    - + - +
    @@ -256,7 +265,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -284,7 +293,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -312,7 +321,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -345,7 +354,7 @@

    lsToMesh
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsToSurfaceMesh-members.html b/docs/doxygen/html/classlsToSurfaceMesh-members.html index 00eb6af3..0a15c9f3 100644 --- a/docs/doxygen/html/classlsToSurfaceMesh-members.html +++ b/docs/doxygen/html/classlsToSurfaceMesh-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -99,7 +105,7 @@
    diff --git a/docs/doxygen/html/classlsToSurfaceMesh.html b/docs/doxygen/html/classlsToSurfaceMesh.html index 425a999c..d1ba0968 100644 --- a/docs/doxygen/html/classlsToSurfaceMesh.html +++ b/docs/doxygen/html/classlsToSurfaceMesh.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsToSurfaceMesh< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -88,7 +94,7 @@
    -

    Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit surface elements: Lines in 2D, Triangles in 3D. +

    Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit surface elements: Lines in 2D, Triangles in 3D. More...

    #include <lsToSurfaceMesh.hpp>

    @@ -110,16 +116,17 @@

    template<class T, int D>
    class lsToSurfaceMesh< T, D >

    -

    Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit surface elements: Lines in 2D, Triangles in 3D.

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    -

    Constructor & Destructor Documentation

    +

    Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit surface elements: Lines in 2D, Triangles in 3D.

    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsToSurfaceMesh() [1/2]

    -template<class T, int D>
    +template<class T , int D>
    - + - + - + @@ -368,7 +374,7 @@

    lsVTKReader
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsVTKWriter-members.html b/docs/doxygen/html/classlsVTKWriter-members.html index 9b1c1fe4..fcef0843 100644 --- a/docs/doxygen/html/classlsVTKWriter-members.html +++ b/docs/doxygen/html/classlsVTKWriter-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    @@ -147,7 +154,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -192,7 +199,7 @@

    -template<class T, int D>
    +template<class T , int D>
    - + @@ -345,7 +351,7 @@

    lsToVoxelMesh
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsVTKReader-members.html b/docs/doxygen/html/classlsVTKReader-members.html index 468b3539..6adfe954 100644 --- a/docs/doxygen/html/classlsVTKReader-members.html +++ b/docs/doxygen/html/classlsVTKReader-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    @@ -210,6 +217,8 @@

    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    @@ -219,7 +228,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -247,7 +256,7 @@

    -template<class T, int D>
    +template<class T , int D>
    @@ -280,7 +289,7 @@

    lsToSurfaceMesh
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsToVoxelMesh-members.html b/docs/doxygen/html/classlsToVoxelMesh-members.html index 9227e965..be38ce4a 100644 --- a/docs/doxygen/html/classlsToVoxelMesh-members.html +++ b/docs/doxygen/html/classlsToVoxelMesh-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -101,7 +107,7 @@
    diff --git a/docs/doxygen/html/classlsToVoxelMesh.html b/docs/doxygen/html/classlsToVoxelMesh.html index 344a0fda..cd0c3215 100644 --- a/docs/doxygen/html/classlsToVoxelMesh.html +++ b/docs/doxygen/html/classlsToVoxelMesh.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsToVoxelMesh< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -104,7 +110,7 @@

     lsToVoxelMesh (const std::vector< lsSmartPointer< lsDomain< T, D >>> passedLevelSets, lsSmartPointer< lsMesh > passedMesh)
     
    void insertNextLevelSet (lsSmartPointer< lsDomain< T, D >> passedLevelSet)
     Push level set to the list of level sets used for output. If more than one are specified, the voxels will be marked using a material number for each level set and output into a single mesh. More...
     Push level set to the list of level sets used for output. If more than one are specified, the voxels will be marked using a material number for each level set and output into a single mesh. More...
     
    void setMesh (lsSmartPointer< lsMesh > passedMesh)
     
     - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -102,7 +108,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsVTKReader.html b/docs/doxygen/html/classlsVTKReader.html index 8bd40b8d..c5cbc7b9 100644 --- a/docs/doxygen/html/classlsVTKReader.html +++ b/docs/doxygen/html/classlsVTKReader.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsVTKReader Class Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -104,13 +110,13 @@

     lsVTKReader (lsSmartPointer< lsMesh > passedMesh, lsFileFormatEnum passedFormat, std::string passedFileName)
     
    void setMesh (lsSmartPointer< lsMesh > passedMesh)
     set the mesh the file should be read into More...
     set the mesh the file should be read into More...
     
    void setFileFormat (lsFileFormatEnum passedFormat)
     set file format for file to read. Defaults to VTK_LEGACY. More...
     set file format for file to read. Defaults to VTK_LEGACY. More...
     
    void setFileName (std::string passedFileName)
     set file name for file to read More...
     set file name for file to read More...
     
    void apply ()
     
    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -102,7 +108,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsVTKWriter.html b/docs/doxygen/html/classlsVTKWriter.html index fa76e3dc..3aeec35e 100644 --- a/docs/doxygen/html/classlsVTKWriter.html +++ b/docs/doxygen/html/classlsVTKWriter.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsVTKWriter Class Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -88,7 +94,7 @@
    -

    Class handling the output of an lsMesh to VTK file types. +

    Class handling the output of an lsMesh to VTK file types. More...

    #include <lsVTKWriter.hpp>

    @@ -106,18 +112,19 @@

    void setMesh (lsSmartPointer< lsMesh > passedMesh)
     
    void setFileFormat (lsFileFormatEnum passedFormat)
     set file format for file to write. Defaults to VTK_LEGACY. More...
     set file format for file to write. Defaults to VTK_LEGACY. More...
     
    void setFileName (std::string passedFileName)
     set file name for file to write More...
     set file name for file to write More...
     
    void apply ()
     

    Detailed Description

    -

    Class handling the output of an lsMesh to VTK file types.

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    -

    Constructor & Destructor Documentation

    +

    Class handling the output of an lsMesh to VTK file types.

    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    +

    Constructor & Destructor Documentation

    ◆ lsVTKWriter() [1/4]

    @@ -270,8 +277,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    + @@ -367,7 +375,7 @@

    lsVTKWriter
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/classlsVelocityField-members.html b/docs/doxygen/html/classlsVelocityField-members.html index b1d1b57f..c544842b 100644 --- a/docs/doxygen/html/classlsVelocityField-members.html +++ b/docs/doxygen/html/classlsVelocityField-members.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Member List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -99,7 +105,7 @@
    diff --git a/docs/doxygen/html/classlsVelocityField.html b/docs/doxygen/html/classlsVelocityField.html index 15af32dd..3f97618a 100644 --- a/docs/doxygen/html/classlsVelocityField.html +++ b/docs/doxygen/html/classlsVelocityField.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsVelocityField< T > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -98,13 +104,13 @@

     lsVelocityField ()
     
    virtual T getScalarVelocity (const std::array< T, 3 > &, int, const std::array< T, 3 > &)
     Should return a scalar value for the velocity at coordinate for a point of material with the given normalVector. More...
     Should return a scalar value for the velocity at coordinate for a point of material with the given normalVector. More...
     
    virtual std::array< T, 3 > getVectorVelocity (const std::array< T, 3 > &, int, const std::array< T, 3 > &)
     Like getScalarVelocity, but returns a velocity value for each cartesian direction. More...
     Like getScalarVelocity, but returns a velocity value for each cartesian direction. More...
     
    virtual T getDissipationAlpha (int, int, const std::array< T, 3 > &)
     If lsLocalLaxFriedrichsAnalytical is used as the advection scheme, this is called to provide the analytical solution for the alpha values, needed for stable integration. More...
     If lsLocalLaxFriedrichsAnalytical is used as the advection scheme, this is called to provide the analytical solution for the alpha values, needed for stable integration. More...
     
    virtual ~lsVelocityField ()
     
    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/classlsWriter.html b/docs/doxygen/html/classlsWriter.html index c39e20d8..f01eaaea 100644 --- a/docs/doxygen/html/classlsWriter.html +++ b/docs/doxygen/html/classlsWriter.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsWriter< T, D > Class Template Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -101,7 +107,7 @@

    void setLevelSet (lsSmartPointer< lsDomain< T, D >> passedLevelSet)
     
    void setFileName (std::string passedFileName)
     set file name for file to write More...
     set file name for file to write More...
     
    void apply ()
     
     - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -112,7 +118,7 @@
  • Examples
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/dir_08bcc5769451b7c98762cd48e14e162b.html b/docs/doxygen/html/dir_08bcc5769451b7c98762cd48e14e162b.html index 81708f71..b952febb 100644 --- a/docs/doxygen/html/dir_08bcc5769451b7c98762cd48e14e162b.html +++ b/docs/doxygen/html/dir_08bcc5769451b7c98762cd48e14e162b.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples/GeometricAdvection Directory Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@

    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
  • Examples
  • GeometricAdvection
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16
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    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@
  • Examples
  • PeriodicBoundary
  • Generated by - doxygen 1.8.13
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    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@
  • Examples
  • SquareEtch
  • Generated by - doxygen 1.8.13
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    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
  • Examples
  • Deposition
  • Generated by - doxygen 1.8.13
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    @@ -62,7 +66,9 @@
    @@ -100,7 +106,7 @@
  • Examples
  • AirGapDeposition
  • Generated by - doxygen 1.8.13
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    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@
  • Examples
  • PatternedSubstrate
  • Generated by - doxygen 1.8.13
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    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@
  • Examples
  • VoidEtching
  • Generated by - doxygen 1.8.13
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    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@
  • Examples
  • SharedLib
  • Generated by - doxygen 1.8.13
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    @@ -62,7 +66,9 @@
    @@ -98,7 +104,7 @@
  • lib
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/dir_d44c64559bbebec7f509842c48db8b23.html b/docs/doxygen/html/dir_d44c64559bbebec7f509842c48db8b23.html index 4754cc70..b383ac09 100644 --- a/docs/doxygen/html/dir_d44c64559bbebec7f509842c48db8b23.html +++ b/docs/doxygen/html/dir_d44c64559bbebec7f509842c48db8b23.html @@ -1,9 +1,9 @@ - + - + ViennaLS: include Directory Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -169,6 +175,8 @@   file  lsWriter.hpp   +file  lsWriteVisualizationMesh.hpp + 
    @@ -178,7 +186,7 @@
  • include
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/dir_d44c64559bbebec7f509842c48db8b23.js b/docs/doxygen/html/dir_d44c64559bbebec7f509842c48db8b23.js index cd0206c0..61906088 100644 --- a/docs/doxygen/html/dir_d44c64559bbebec7f509842c48db8b23.js +++ b/docs/doxygen/html/dir_d44c64559bbebec7f509842c48db8b23.js @@ -116,5 +116,6 @@ var dir_d44c64559bbebec7f509842c48db8b23 = ] ], [ "lsWriter.hpp", "lsWriter_8hpp.html", [ [ "lsWriter", "classlsWriter.html", "classlsWriter" ] - ] ] + ] ], + [ "lsWriteVisualizationMesh.hpp", "lsWriteVisualizationMesh_8hpp.html", null ] ]; \ No newline at end of file diff --git a/docs/doxygen/html/doxygen.css b/docs/doxygen/html/doxygen.css index 4f1ab919..5bc13aac 100644 --- a/docs/doxygen/html/doxygen.css +++ b/docs/doxygen/html/doxygen.css @@ -1,4 +1,4 @@ -/* The standard CSS for doxygen 1.8.13 */ +/* The standard CSS for doxygen 1.8.16 */ body, table, div, p, dl { font: 400 14px/22px Roboto,sans-serif; @@ -53,11 +53,13 @@ dt { font-weight: bold; } -div.multicol { +ul.multicol { -moz-column-gap: 1em; -webkit-column-gap: 1em; + column-gap: 1em; -moz-column-count: 3; -webkit-column-count: 3; + column-count: 3; } p.startli, p.startdd { @@ -80,6 +82,15 @@ p.endtd { margin-bottom: 2px; } +p.interli { +} + +p.interdd { +} + +p.intertd { +} + /* @end */ caption { @@ -134,12 +145,12 @@ a.qindex { a.qindexHL { font-weight: bold; background-color: #9CAFD4; - color: #ffffff; + color: #FFFFFF; border: 1px double #869DCA; } .contents a.qindexHL:visited { - color: #ffffff; + color: #FFFFFF; } a.el { @@ -163,6 +174,25 @@ dl.el { margin-left: -1cm; } +ul { + overflow: hidden; /*Fixed: list item bullets overlap floating elements*/ +} + +#side-nav ul { + overflow: visible; /* reset ul rule for scroll bar in GENERATE_TREEVIEW window */ +} + +#main-nav ul { + overflow: visible; /* reset ul rule for the navigation bar drop down lists */ +} + +.fragment { + text-align: left; + direction: ltr; + overflow-x: auto; /*Fixed: fragment lines overlap floating elements*/ + overflow-y: hidden; +} + pre.fragment { border: 1px solid #C4CFE5; background-color: #FBFCFD; @@ -177,8 +207,8 @@ pre.fragment { } div.fragment { - padding: 0px; - margin: 4px 8px 4px 2px; + padding: 0 0 1px 0; /*Fixed: last line underline overlap border*/ + margin: 4px 8px 4px 2px; background-color: #FBFCFD; border: 1px solid #C4CFE5; } @@ -248,7 +278,7 @@ span.lineno a:hover { div.ah, span.ah { background-color: black; font-weight: bold; - color: #ffffff; + color: #FFFFFF; margin-bottom: 3px; margin-top: 3px; padding: 0.2em; @@ -324,7 +354,7 @@ img.formulaDsp { } -img.formulaInl { +img.formulaInl, img.inline { vertical-align: middle; } @@ -402,6 +432,13 @@ blockquote { padding: 0 12px 0 16px; } +blockquote.DocNodeRTL { + border-left: 0; + border-right: 2px solid #9CAFD4; + margin: 0 4px 0 24px; + padding: 0 16px 0 12px; +} + /* @end */ /* @@ -666,17 +703,17 @@ dl.reflist dd { padding-left: 0px; } -.params .paramname, .retval .paramname { +.params .paramname, .retval .paramname, .tparams .paramname, .exception .paramname { font-weight: bold; vertical-align: top; } -.params .paramtype { +.params .paramtype, .tparams .paramtype { font-style: italic; vertical-align: top; } -.params .paramdir { +.params .paramdir, .tparams .paramdir { font-family: "courier new",courier,monospace; vertical-align: top; } @@ -1081,72 +1118,143 @@ div.headertitle padding: 5px 5px 5px 10px; } -dl -{ - padding: 0 0 0 10px; +.PageDocRTL-title div.headertitle { + text-align: right; + direction: rtl; } -/* dl.note, dl.warning, dl.attention, dl.pre, dl.post, dl.invariant, dl.deprecated, dl.todo, dl.test, dl.bug */ -dl.section -{ +dl { + padding: 0 0 0 0; +} + +/* dl.note, dl.warning, dl.attention, dl.pre, dl.post, dl.invariant, dl.deprecated, dl.todo, dl.test, dl.bug, dl.examples */ +dl.section { margin-left: 0px; padding-left: 0px; } -dl.note -{ - margin-left:-7px; - padding-left: 3px; - border-left:4px solid; - border-color: #D0C000; +dl.section.DocNodeRTL { + margin-right: 0px; + padding-right: 0px; } -dl.warning, dl.attention -{ - margin-left:-7px; - padding-left: 3px; - border-left:4px solid; - border-color: #FF0000; +dl.note { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #D0C000; } -dl.pre, dl.post, dl.invariant -{ - margin-left:-7px; - padding-left: 3px; - border-left:4px solid; - border-color: #00D000; +dl.note.DocNodeRTL { + margin-left: 0; + padding-left: 0; + border-left: 0; + margin-right: -7px; + padding-right: 3px; + border-right: 4px solid; + border-color: #D0C000; +} + +dl.warning, dl.attention { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #FF0000; } -dl.deprecated -{ - margin-left:-7px; - padding-left: 3px; - border-left:4px solid; - border-color: #505050; +dl.warning.DocNodeRTL, dl.attention.DocNodeRTL { + margin-left: 0; + padding-left: 0; + border-left: 0; + margin-right: -7px; + padding-right: 3px; + border-right: 4px solid; + border-color: #FF0000; } -dl.todo -{ - margin-left:-7px; - padding-left: 3px; - border-left:4px solid; - border-color: #00C0E0; +dl.pre, dl.post, dl.invariant { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #00D000; } -dl.test -{ - margin-left:-7px; - padding-left: 3px; - border-left:4px solid; - border-color: #3030E0; +dl.pre.DocNodeRTL, dl.post.DocNodeRTL, dl.invariant.DocNodeRTL { + margin-left: 0; + padding-left: 0; + border-left: 0; + margin-right: -7px; + padding-right: 3px; + border-right: 4px solid; + border-color: #00D000; } -dl.bug -{ - margin-left:-7px; - padding-left: 3px; - border-left:4px solid; - border-color: #C08050; +dl.deprecated { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #505050; +} + +dl.deprecated.DocNodeRTL { + margin-left: 0; + padding-left: 0; + border-left: 0; + margin-right: -7px; + padding-right: 3px; + border-right: 4px solid; + border-color: #505050; +} + +dl.todo { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #00C0E0; +} + +dl.todo.DocNodeRTL { + margin-left: 0; + padding-left: 0; + border-left: 0; + margin-right: -7px; + padding-right: 3px; + border-right: 4px solid; + border-color: #00C0E0; +} + +dl.test { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #3030E0; +} + +dl.test.DocNodeRTL { + margin-left: 0; + padding-left: 0; + border-left: 0; + margin-right: -7px; + padding-right: 3px; + border-right: 4px solid; + border-color: #3030E0; +} + +dl.bug { + margin-left: -7px; + padding-left: 3px; + border-left: 4px solid; + border-color: #C08050; +} + +dl.bug.DocNodeRTL { + margin-left: 0; + padding-left: 0; + border-left: 0; + margin-right: -7px; + padding-right: 3px; + border-right: 4px solid; + border-color: #C08050; } dl.section dd { @@ -1263,6 +1371,11 @@ div.toc { width: 200px; } +.PageDocRTL-title div.toc { + float: left !important; + text-align: right; +} + div.toc li { background: url("bdwn.png") no-repeat scroll 0 5px transparent; font: 10px/1.2 Verdana,DejaVu Sans,Geneva,sans-serif; @@ -1271,6 +1384,12 @@ div.toc li { padding-top: 2px; } +.PageDocRTL-title div.toc li { + background-position-x: right !important; + padding-left: 0 !important; + padding-right: 10px; +} + div.toc h3 { font: bold 12px/1.2 Arial,FreeSans,sans-serif; color: #4665A2; @@ -1300,6 +1419,26 @@ div.toc li.level4 { margin-left: 45px; } +.PageDocRTL-title div.toc li.level1 { + margin-left: 0 !important; + margin-right: 0; +} + +.PageDocRTL-title div.toc li.level2 { + margin-left: 0 !important; + margin-right: 15px; +} + +.PageDocRTL-title div.toc li.level3 { + margin-left: 0 !important; + margin-right: 30px; +} + +.PageDocRTL-title div.toc li.level4 { + margin-left: 0 !important; + margin-right: 45px; +} + .inherit_header { font-weight: bold; color: gray; @@ -1413,7 +1552,7 @@ tr.heading h2 { } #powerTip.n:after, #powerTip.ne:after, #powerTip.nw:after { - border-top-color: #ffffff; + border-top-color: #FFFFFF; border-width: 10px; margin: 0px -10px; } @@ -1441,7 +1580,7 @@ tr.heading h2 { } #powerTip.s:after, #powerTip.se:after, #powerTip.sw:after { - border-bottom-color: #ffffff; + border-bottom-color: #FFFFFF; border-width: 10px; margin: 0px -10px; } @@ -1468,7 +1607,7 @@ tr.heading h2 { left: 100%; } #powerTip.e:after { - border-left-color: #ffffff; + border-left-color: #FFFFFF; border-width: 10px; top: 50%; margin-top: -10px; @@ -1484,7 +1623,7 @@ tr.heading h2 { right: 100%; } #powerTip.w:after { - border-right-color: #ffffff; + border-right-color: #FFFFFF; border-width: 10px; top: 50%; margin-top: -10px; @@ -1592,5 +1731,36 @@ th.markdownTableHeadCenter, td.markdownTableBodyCenter { text-align: center } +.DocNodeRTL { + text-align: right; + direction: rtl; +} + +.DocNodeLTR { + text-align: left; + direction: ltr; +} + +table.DocNodeRTL { + width: auto; + margin-right: 0; + margin-left: auto; +} + +table.DocNodeLTR { + width: auto; + margin-right: auto; + margin-left: 0; +} +tt, code, kbd, samp +{ + display: inline-block; + direction:ltr; +} /* @end */ + +u { + text-decoration: underline; +} + diff --git a/docs/doxygen/html/dynsections.js b/docs/doxygen/html/dynsections.js index 85e18369..ea0a7b39 100644 --- a/docs/doxygen/html/dynsections.js +++ b/docs/doxygen/html/dynsections.js @@ -1,3 +1,26 @@ +/* + @licstart The following is the entire license notice for the + JavaScript code in this file. + + Copyright (C) 1997-2017 by Dimitri van Heesch + + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + + @licend The above is the entire license notice + for the JavaScript code in this file + */ function toggleVisibility(linkObj) { var base = $(linkObj).attr('id'); @@ -15,7 +38,7 @@ function toggleVisibility(linkObj) summary.hide(); $(linkObj).removeClass('closed').addClass('opened'); $(trigger).attr('src',src.substring(0,src.length-10)+'open.png'); - } + } return false; } @@ -94,4 +117,4 @@ function toggleInherit(id) $(img).attr('src',src.substring(0,src.length-10)+'open.png'); } } - +/* @license-end */ diff --git a/docs/doxygen/html/examples.html b/docs/doxygen/html/examples.html index fcb18697..b5d0be22 100644 --- a/docs/doxygen/html/examples.html +++ b/docs/doxygen/html/examples.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Examples @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -115,7 +121,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/files.html b/docs/doxygen/html/files.html index f551656f..a766b5ed 100644 --- a/docs/doxygen/html/files.html +++ b/docs/doxygen/html/files.html @@ -1,9 +1,9 @@ - + - + ViennaLS: File List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -148,8 +154,9 @@  lsVTKReader.hpp  lsVTKWriter.hpp  lsWriter.hpp - ▼ lib - specialisations.cpp + lsWriteVisualizationMesh.hpp + ▼ lib + specialisations.cpp
    @@ -159,7 +166,7 @@
    • Generated by - doxygen 1.8.13
      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/files.js b/docs/doxygen/html/files_dup.js similarity index 95% rename from docs/doxygen/html/files.js rename to docs/doxygen/html/files_dup.js index 83966871..905e30a3 100644 --- a/docs/doxygen/html/files.js +++ b/docs/doxygen/html/files_dup.js @@ -1,4 +1,4 @@ -var files = +var files_dup = [ [ "Examples", "dir_03680f297d755c096b0a1ead13ee12b7.html", "dir_03680f297d755c096b0a1ead13ee12b7" ], [ "include", "dir_d44c64559bbebec7f509842c48db8b23.html", "dir_d44c64559bbebec7f509842c48db8b23" ], diff --git a/docs/doxygen/html/functions.html b/docs/doxygen/html/functions.html index d37189b6..de129e63 100644 --- a/docs/doxygen/html/functions.html +++ b/docs/doxygen/html/functions.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Class Members @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -128,7 +134,7 @@

    - a -

      • Generated by - doxygen 1.8.13
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    @@ -62,7 +66,9 @@
    @@ -97,7 +103,7 @@

    - b -

      • Generated by - doxygen 1.8.13
        • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/functions_c.html b/docs/doxygen/html/functions_c.html index 6a03c93a..49a61fec 100644 --- a/docs/doxygen/html/functions_c.html +++ b/docs/doxygen/html/functions_c.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Class Members @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -104,7 +110,7 @@

    - c -

      • Generated by - doxygen 1.8.13
        • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/functions_d.html b/docs/doxygen/html/functions_d.html index 87707857..bfe6dcf4 100644 --- a/docs/doxygen/html/functions_d.html +++ b/docs/doxygen/html/functions_d.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Class Members @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -110,7 +116,7 @@

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      • Generated by - doxygen 1.8.13
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      • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/index.html b/docs/doxygen/html/index.html index 3d6773c9..e8a69b66 100644 --- a/docs/doxygen/html/index.html +++ b/docs/doxygen/html/index.html @@ -1,9 +1,9 @@ - + - +ViennaLS: ViennaLS @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@
     ClsFromSurfaceMesh< T, D >::box::iteratorIterator over all grid points, contained by a box
     ClsAdvect< T, D >This class is used to advance level sets over time. Level sets are passed to the constructor in an std::vector, with the last element being the level set to advect, or "top level set", while the others are then adjusted afterwards. In order to ensure that advection works correctly, the "top level set" has to include all lower level sets: LS_top = LS_top U LS_i for i = {0 ... n}, where n is the number of level sets. The velocities used to advect the level set are given in a concrete implementation of the lsVelocityField (check Advection examples for guidance)
     ClsAdvect< T, D >This class is used to advance level sets over time. Level sets are passed to the constructor in an std::vector, with the last element being the level set to advect, or "top level set", while the others are then adjusted afterwards. In order to ensure that advection works correctly, the "top level set" has to include all lower level sets: LS_top = LS_top U LS_i for i = {0 ... n}, where n is the number of level sets. The velocities used to advect the level set are given in a concrete implementation of the lsVelocityField (check Advection examples for guidance)
     ClsBooleanOperation< T, D >This class is used to perform boolean operations on two level sets and write the resulting level set into the first passed level set. When the boolean operation is set to CUSTOM, a comparator must be set using setBooleanOperationComparator. This comparator returns one value generated from the level set value supplied by each level set. E.g.: for a union, the comparator will always return the smaller of the two values
     ClsBox< T, D >Class describing a square box from one coordinate to another
     ClsCalculateNormalVectors< T, D >This algorithm is used to compute the normal vectors for all points with level set values <= 0.5. The result is saved in the lsPointData of the lsDomain and can be retrieved with lsDomain.getPointData().getVectorData("Normals"). Since neighbors in each cartesian direction are necessary for the calculation, the levelset width must be >=3
     ClsCalculateNormalVectors< T, D >This algorithm is used to compute the normal vectors for all points with level set values <= 0.5. The result is saved in the lsPointData of the lsDomain and can be retrieved with lsDomain.getPointData().getVectorData("Normals"). Since neighbors in each cartesian direction are necessary for the calculation, the levelset width must be >=3
     ClsCheck< T, D >This class is used to find errors in the underlying level set structure, like invalid neighbours of different signs
     ClsConvexHull< T, D >This algorithm creates a convex hull mesh from a point cloud. This is done using the gift wrapping approach. The points in the point cloud must be unique
     ClsDomain< T, D >Class containing all information about the level set, including the dimensions of the domain, boundary conditions and all data
     ClsInternal::lsEnquistOsher< T, D, order >Engquist osher integration scheme based on the upwind integration scheme. Offers high performance but lower accuracy for complex velocity fields
     ClsExpand< T, D >Expands the leveleSet to the specified number of layers. The largest value in the levelset is thus width*0.5 Returns the number of added points
     ClsInternal::lsFiniteDifferences< T, scheme >
     ClsFromMesh< T, D >Import the regular grid, on which the level set values are defined, from an explicit lsMesh. The Vertices must be defined, as well as a scalar data field "LSValues". If used for custom read-in, make sure all vertices are lexicographically sorted
     ClsFromMesh< T, D >Import the regular grid, on which the level set values are defined, from an explicit lsMesh. The Vertices must be defined, as well as a scalar data field "LSValues". If used for custom read-in, make sure all vertices are lexicographically sorted
     ClsFromSurfaceMesh< T, D >Construct a level set from an explicit mesh
     ClsFromVolumeMesh< T, D >This class creates a level set from a tetrahedral mesh. If the mesh contains a scalar data array called "Material", one level set for each material will be created and stored in the supplied std::vector<lsDomain<T,D>> object
     ClsGeometricAdvect< T, D >This class advects the level set according to a given distribution. This distribution is overlayed at every grid point of the old surface. All cells within this distribution are then filled, with cells at the edge marked with the correct level set values. Therefore, the surface can be shifted long distances in one step. This algorithm is therefore preferable to normal advection if there is growth/reduction by a geometric directional distribution
     ClsSphereDistribution< T, D >Concrete implementation of lsGeometricAdvectDistribution for a spherical advection distribution
     ClsInternal::lsGraph
     ClsInternal::lsLaxFriedrichs< T, D, order >Lax Friedrichs integration scheme with constant alpha value for dissipation. This alpha value should be fitted based on the results of the advection and passed to the advection Kernel
     ClsInternal::lsLocalLaxFriedrichs< T, D, order >Lax Friedrichs integration scheme, which uses a first neighbour stencil to calculate the alpha values for all neighbours. The largest alpha value is then chosen for dissipation. Slower than lsLocalLocalLaxFriedrichs or lsEngquistOsher but more reliable for complex velocity fields
     ClsInternal::lsLocalLaxFriedrichsAnalytical< T, D, order >Lax Friedrichs integration scheme, which uses alpha values provided by the user in getDissipationAlphas in lsVelocityField. If it is possible to derive analytical solutions for the velocityField and the alpha values, this integration scheme should be used and never otherwise
     ClsInternal::lsLocalLaxFriedrichs< T, D, order >Lax Friedrichs integration scheme, which uses a first neighbour stencil to calculate the alpha values for all neighbours. The largest alpha value is then chosen for dissipation. Slower than lsLocalLocalLaxFriedrichs or lsEngquistOsher but more reliable for complex velocity fields
     ClsInternal::lsLocalLaxFriedrichsAnalytical< T, D, order >Lax Friedrichs integration scheme, which uses alpha values provided by the user in getDissipationAlphas in lsVelocityField. If it is possible to derive analytical solutions for the velocityField and the alpha values, this integration scheme should be used and never otherwise
     ClsInternal::lsLocalLocalLaxFriedrichs< T, D, order >Lax Friedrichs integration scheme, which considers only the current point for alpha calculation. Faster than lsLocalLaxFriedrichs but not as accurate
     ClsMakeGeometry< T, D >Create level sets describing basic geometric forms
     ClsInternal::lsMarchingCubesHelper class for lsToSurfaceMesh. Should not be used directly
     ClsMeshThis class holds an explicit mesh, which is always given in 3 dimensions. If it describes a 2D mesh, the third dimension is set to 0. Vertices, Lines, Triangles, Tetras & Hexas are supported as geometric elements
     ClsPrune< T, D >Removes all level set points, which do not have at least one oppositely signed neighbour (Meaning they do not lie directly at the interface). Afterwards the level set will occupy the least memory possible
     ClsReader< T, D >
     ClsReduce< T, D >Reduce the level set size to the specified width. This means all level set points with value <= 0.5*width are removed, reducing the memory footprint of the lsDomain
     ClsReduce< T, D >Reduce the level set size to the specified width. This means all level set points with value <= 0.5*width are removed, reducing the memory footprint of the lsDomain
     ClsSphere< T, D >Class describing a sphere via origin and radius
     ClsInternal::lsStencilLocalLaxFriedrichsScalar< T, D, order >Stencil Local Lax Friedrichs Integration Scheme. It uses a stencil of order around active points, in order to evaluate dissipation values for each point, taking into account the mathematical nature of the speed function. see Toifl et al., 2019. ISBN: 978-1-7281-0938-1; DOI: 10.1109/SISPAD.2019.8870443
     ClsToDiskMesh< T, D >This class creates a mesh from the level set with all grid points with a level set value <= 0.5. These grid points are shifted in space towards the direction of their normal vector by grid delta * LS value. Grid delta and the origin grid point are saved for each point. This allows for a simple setup of disks for ray tracing
     ClsToMesh< T, D >Extract the regular grid, on which the level set values are defined, to an explicit lsMesh. The Vertices will contain the level set value stored at its location. (This is very useful for debugging)
     ClsToSurfaceMesh< T, D >Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit surface elements: Lines in 2D, Triangles in 3D
     ClsToMesh< T, D >Extract the regular grid, on which the level set values are defined, to an explicit lsMesh. The Vertices will contain the level set value stored at its location. (This is very useful for debugging)
     ClsToSurfaceMesh< T, D >Extract an explicit lsMesh instance from an lsDomain. The interface is then described by explciit surface elements: Lines in 2D, Triangles in 3D
     ClsToVoxelMesh< T, D >Creates a mesh, which consists only of quads/hexas for completely filled grid cells in the level set. Interfaces will not be smooth but stepped. (This can be used to create meshes for finite difference algorithms)
     ▼ClsVelocityField
     CAirGapDeposition.velocityField
     ClsVelocityField< T >Abstract class defining the interface for the velocity field used during advection using lsAdvect
     ClsVelocityField< double >
     ClsVTKReaderClass handling the import of VTK file types
     ClsVTKWriterClass handling the output of an lsMesh to VTK file types
     ClsVTKWriterClass handling the output of an lsMesh to VTK file types
     ClsWriter< T, D >
     ▼Cshared_ptr
     ClsSmartPointer< T >Std::shared_ptr wrapper for use with ViennaLS. lsSmartPointers should be created using the function ::New(...). All other interface functions are identical to std::shared_ptr
    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -79,63 +85,101 @@
    -
    +
    ViennaLS

    ViennaLS is a header-only C++ level set library developed for high performance topography simulations. The main design goals are simplicity and efficiency, tailored towards scientific simulations. ViennaLS can also be used for visualisation applications, although this is not the main design target.

    IMPORTANT NOTE: ViennaLS is under heavy development and improved daily. If you do have suggestions or find bugs, please let us know!

    -

    Support

    +

    +Support

    Documentation and Examples can be found online.

    Bug reports and suggestions should be filed on GitHub.

    -

    Releases

    +

    +Releases

    Releases are tagged on the maser branch and available in the releases section.

    -

    Building

    -

    Supported Operating Systems

    +

    +Building

    +

    +Supported Operating Systems

    * Windows (Visual Studio)

    * Linux (g++ / clang)

    * macOS (XCode)

    -

    System Requirements

    +

    +System Requirements

    * C++ Compiler with OpenMP support

    * ViennaHRLE

    * VTK (optional)

    -

    Using ViennaLS in your project

    +

    +Using ViennaLS in your project

    Have a look at the example repo for creating a project with ViennaLS as a dependency.

    -

    Installing (with dependencies already installed)

    +

    +Installing (with dependencies already installed)

    Since this is a header only project, it does not require any installation. However, we recommend the following procedure.

    Make sure you have ViennaHRLE installed on your system and run:

    -
    git clone github.com/ViennaTools/ViennaLS.git
    cd ViennaLS
    mkdir build && cd build
    cmake .. -DCMAKE_INSTALL_PREFIX=/path/to/your/custom/install/
    make install

    This will install the necessary headers and CMake files to the specified path. If DCMAKE_INSTALL_PREFIX is not specified, it will be installed to the standard path for your system, usually /usr/local/ .

    -

    Using the viennaLS python module

    +
    git clone github.com/ViennaTools/ViennaLS.git
    +
    cd ViennaLS
    +
    mkdir build && cd build
    +
    cmake .. -DCMAKE_INSTALL_PREFIX=/path/to/your/custom/install/
    +
    make install
    +

    This will install the necessary headers and CMake files to the specified path. If DCMAKE_INSTALL_PREFIX is not specified, it will be installed to the standard path for your system, usually /usr/local/ .

    +

    +Using the viennaLS python module

    The Releases only contain the compiled library for the most common Python version per platform: * Windows: Python 3.8 * Linux: Python 3.6

    For all other Python versions, you have to build the library yourself (see below).

    In order to use ViennaLS in python, just download the python shared libraries from the releases section and put it in your current folder. From this folder just import the 2D or the 3D version of the library:

    -
    import viennaLS2d as vls
    levelset = vls.lsDomain(0.2) # empty level set with grid spacing 0.2
    sphere = vls.lsSphere((0,0,0), 5) # sphere at origin with radius 5
    vls.lsMakeGeometry(levelset, sphere).apply() # create sphere in level set

    All functions which are available in C++ are also available in Python. In order to switch to three dimensions, only the import needs to be changed:

    -
    import viennaLS3d as vls

    Building the python module

    -

    In order to build the python module, set VIENNALS_BUILD_PYTHON_2_7 or VIENNALS_BUILD_PYTHON_3_6 to ON:

    cmake .. -DVIENNALS_BUILD_PYTHON_3_6=ON
    make

    If both options are on, only VIENNALS_BUILD_PYTHON_3_6 will be used, since only one version can be built at a time.

    -

    Integration in CMake projects

    +
    import viennaLS2d as vls
    +
    levelset = vls.lsDomain(0.2) # empty level set with grid spacing 0.2
    +
    sphere = vls.lsSphere((0,0,0), 5) # sphere at origin with radius 5
    +
    vls.lsMakeGeometry(levelset, sphere).apply() # create sphere in level set
    +

    All functions which are available in C++ are also available in Python. In order to switch to three dimensions, only the import needs to be changed:

    +
    import viennaLS3d as vls
    +

    +Building the python module

    +

    In order to build the python module, set VIENNALS_BUILD_PYTHON_2_7 or VIENNALS_BUILD_PYTHON_3_6 to ON:

    cmake .. -DVIENNALS_BUILD_PYTHON_3_6=ON
    +
    make
    +

    If both options are on, only VIENNALS_BUILD_PYTHON_3_6 will be used, since only one version can be built at a time.

    +

    +Integration in CMake projects

    In order to use this library in your CMake project, add the following lines to the CMakeLists.txt of your project:\ (also do not forget to include ViennaHRLE)

    -
    set(ViennaLS_DIR "/path/to/your/custom/install/")
    find_package(ViennaLS REQUIRED)
    add_executable(...)
    target_include_directories(${PROJECT_NAME} PUBLIC ${VIENNALS_INCLUDE_DIRS})
    target_link_libraries(${PROJECT_NAME} ${VIENNALS_LIBRARIES})

    Building examples

    +
    set(ViennaLS_DIR "/path/to/your/custom/install/")
    +
    find_package(ViennaLS REQUIRED)
    +
    add_executable(...)
    +
    target_include_directories(${PROJECT_NAME} PUBLIC ${VIENNALS_INCLUDE_DIRS})
    +
    target_link_libraries(${PROJECT_NAME} ${VIENNALS_LIBRARIES})
    +

    +Building examples

    The examples can be built using CMake:

    -
    mkdir build && cd build
    cmake .. -DVIENNALS_BUILD_EXAMPLES=ON
    make

    Shared libraries

    -

    In order to save build time during developement, dynamically linked shared libraries can be used if ViennaLS was built with them. This is done by precompiling the most common template specialisations. In order to use shared libraries, use

    cmake .. -DVIENNALS_BUILD_SHARED_LIBS=ON

    If ViennaLS was build with shared libraries and you use ViennaLS in your project (see above), CMake will automatically link them to your project. In order to build a release of your own project with better runtime performance, but longer build times, use the following CMake option when building your project:

    VIENNALS_USE_SHARED_LIBS=OFF

    Contributing

    -

    Before being able to merge your PR, make sure you have met all points on the checklist in https://github.com/ViennaTools/viennals/blob/master/CONTRIBUTING.md "CONTRIBUTING.md".

    +
    mkdir build && cd build
    +
    cmake .. -DVIENNALS_BUILD_EXAMPLES=ON
    +
    make
    +

    +Shared libraries

    +

    In order to save build time during developement, dynamically linked shared libraries can be used if ViennaLS was built with them. This is done by precompiling the most common template specialisations. In order to use shared libraries, use

    cmake .. -DVIENNALS_BUILD_SHARED_LIBS=ON
    +

    If ViennaLS was build with shared libraries and you use ViennaLS in your project (see above), CMake will automatically link them to your project. In order to build a release of your own project with better runtime performance, but longer build times, use the following CMake option when building your project:

    VIENNALS_USE_SHARED_LIBS=OFF
    +

    +Contributing

    +

    Before being able to merge your PR, make sure you have met all points on the checklist in CONTRIBUTING.md.

    If you want to contribute to ViennaLS, make sure to follow the LLVM Coding guidelines. Before creating a pull request, make sure ALL files have been formatted by clang-format, which can be done using the format-project.sh script in the root directory.

    -

    Authors

    +

    +Authors

    Current contributors: Lado Filipovic, Paul Manstetten, Xaver Klemenschits and Josef Weinbub

    Founder and initial developer: Otmar Ertl

    Contact us via: vienn.nosp@m.ats@.nosp@m.iue.t.nosp@m.uwie.nosp@m.n.ac..nosp@m.at

    ViennaLS was developed under the aegis of the 'Institute for Microelectronics' at the 'TU Wien'. http://www.iue.tuwien.ac.at/

    -

    License

    +

    +License

    See file LICENSE in the base directory.

    -
    +
    + diff --git a/docs/doxygen/html/jquery.js b/docs/doxygen/html/jquery.js index f5343eda..103c32d7 100644 --- a/docs/doxygen/html/jquery.js +++ b/docs/doxygen/html/jquery.js @@ -1,71 +1,26 @@ +/*! jQuery v3.4.1 | (c) JS Foundation and other contributors | jquery.org/license */ +!function(e,t){"use strict";"object"==typeof module&&"object"==typeof module.exports?module.exports=e.document?t(e,!0):function(e){if(!e.document)throw new Error("jQuery requires a window with a document");return t(e)}:t(e)}("undefined"!=typeof window?window:this,function(C,e){"use strict";var t=[],E=C.document,r=Object.getPrototypeOf,s=t.slice,g=t.concat,u=t.push,i=t.indexOf,n={},o=n.toString,v=n.hasOwnProperty,a=v.toString,l=a.call(Object),y={},m=function(e){return"function"==typeof e&&"number"!=typeof e.nodeType},x=function(e){return null!=e&&e===e.window},c={type:!0,src:!0,nonce:!0,noModule:!0};function b(e,t,n){var r,i,o=(n=n||E).createElement("script");if(o.text=e,t)for(r in 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i=e.data("ui-form-reset-instances");t.each(i,function(){this.refresh()})})},_bindFormResetHandler:function(){if(this.form=this.element.form(),this.form.length){var t=this.form.data("ui-form-reset-instances")||[];t.length||this.form.on("reset.ui-form-reset",this._formResetHandler),t.push(this),this.form.data("ui-form-reset-instances",t)}},_unbindFormResetHandler:function(){if(this.form.length){var e=this.form.data("ui-form-reset-instances");e.splice(t.inArray(this,e),1),e.length?this.form.data("ui-form-reset-instances",e):this.form.removeData("ui-form-reset-instances").off("reset.ui-form-reset")}}},"1.7"===t.fn.jquery.substring(0,3)&&(t.each(["Width","Height"],function(e,i){function s(e,i,s,o){return t.each(n,function(){i-=parseFloat(t.css(e,"padding"+this))||0,s&&(i-=parseFloat(t.css(e,"border"+this+"Width"))||0),o&&(i-=parseFloat(t.css(e,"margin"+this))||0)}),i}var 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0},disableSelection:function(){return this.bind((a.support.selectstart?"selectstart":"mousedown")+".ui-disableSelection",function(e){e.preventDefault()})},enableSelection:function(){return this.unbind(".ui-disableSelection")}});a.each(["Width","Height"],function(g,e){var f=e==="Width"?["Left","Right"]:["Top","Bottom"],h=e.toLowerCase(),k={innerWidth:a.fn.innerWidth,innerHeight:a.fn.innerHeight,outerWidth:a.fn.outerWidth,outerHeight:a.fn.outerHeight};function j(m,l,i,n){a.each(f,function(){l-=parseFloat(a.curCSS(m,"padding"+this,true))||0;if(i){l-=parseFloat(a.curCSS(m,"border"+this+"Width",true))||0}if(n){l-=parseFloat(a.curCSS(m,"margin"+this,true))||0}});return l}a.fn["inner"+e]=function(i){if(i===d){return k["inner"+e].call(this)}return this.each(function(){a(this).css(h,j(this,i)+"px")})};a.fn["outer"+e]=function(i,l){if(typeof i!=="number"){return k["outer"+e].call(this,i)}return this.each(function(){a(this).css(h,j(this,i,true,l)+"px")})}});function c(g,e){var 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h=a.ui[f].prototype;for(var e in j){h.plugins[e]=h.plugins[e]||[];h.plugins[e].push([g,j[e]])}},call:function(e,g,f){var j=e.plugins[g];if(!j||!e.element[0].parentNode){return}for(var h=0;h0){return true}h[e]=1;g=(h[e]>0);h[e]=0;return g},isOverAxis:function(f,e,g){return(f>e)&&(f<(e+g))},isOver:function(j,f,i,h,e,g){return a.ui.isOverAxis(j,i,e)&&a.ui.isOverAxis(f,h,g)}})})(jQuery);/*! - * jQuery UI Widget 1.8.18 - * - * Copyright 2011, AUTHORS.txt (http://jqueryui.com/about) - * Dual licensed under the MIT or GPL Version 2 licenses. - * http://jquery.org/license - * - * http://docs.jquery.com/UI/Widget - */ -(function(b,d){if(b.cleanData){var c=b.cleanData;b.cleanData=function(f){for(var g=0,h;(h=f[g])!=null;g++){try{b(h).triggerHandler("remove")}catch(j){}}c(f)}}else{var a=b.fn.remove;b.fn.remove=function(e,f){return this.each(function(){if(!f){if(!e||b.filter(e,[this]).length){b("*",this).add([this]).each(function(){try{b(this).triggerHandler("remove")}catch(g){}})}}return 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http://jquery.org/license - * - * http://docs.jquery.com/UI/Mouse - * - * Depends: - * jquery.ui.widget.js - */ -(function(b,c){var a=false;b(document).mouseup(function(d){a=false});b.widget("ui.mouse",{options:{cancel:":input,option",distance:1,delay:0},_mouseInit:function(){var d=this;this.element.bind("mousedown."+this.widgetName,function(e){return d._mouseDown(e)}).bind("click."+this.widgetName,function(e){if(true===b.data(e.target,d.widgetName+".preventClickEvent")){b.removeData(e.target,d.widgetName+".preventClickEvent");e.stopImmediatePropagation();return false}});this.started=false},_mouseDestroy:function(){this.element.unbind("."+this.widgetName)},_mouseDown:function(f){if(a){return}(this._mouseStarted&&this._mouseUp(f));this._mouseDownEvent=f;var e=this,g=(f.which==1),d=(typeof this.options.cancel=="string"&&f.target.nodeName?b(f.target).closest(this.options.cancel).length:false);if(!g||d||!this._mouseCapture(f)){return true}this.mouseDelayMet=!this.options.delay;if(!this.mouseDelayMet){this._mouseDelayTimer=setTimeout(function(){e.mouseDelayMet=true},this.options.delay)}if(this._mouseDistanceMet(f)&&this._mouseDelayMet(f)){this._mouseStarted=(this._mouseStart(f)!==false);if(!this._mouseStarted){f.preventDefault();return true}}if(true===b.data(f.target,this.widgetName+".preventClickEvent")){b.removeData(f.target,this.widgetName+".preventClickEvent")}this._mouseMoveDelegate=function(h){return e._mouseMove(h)};this._mouseUpDelegate=function(h){return e._mouseUp(h)};b(document).bind("mousemove."+this.widgetName,this._mouseMoveDelegate).bind("mouseup."+this.widgetName,this._mouseUpDelegate);f.preventDefault();a=true;return true},_mouseMove:function(d){if(b.browser.msie&&!(document.documentMode>=9)&&!d.button){return this._mouseUp(d)}if(this._mouseStarted){this._mouseDrag(d);return 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true}})})(jQuery);(function(c,d){c.widget("ui.resizable",c.ui.mouse,{widgetEventPrefix:"resize",options:{alsoResize:false,animate:false,animateDuration:"slow",animateEasing:"swing",aspectRatio:false,autoHide:false,containment:false,ghost:false,grid:false,handles:"e,s,se",helper:false,maxHeight:null,maxWidth:null,minHeight:10,minWidth:10,zIndex:1000},_create:function(){var f=this,k=this.options;this.element.addClass("ui-resizable");c.extend(this,{_aspectRatio:!!(k.aspectRatio),aspectRatio:k.aspectRatio,originalElement:this.element,_proportionallyResizeElements:[],_helper:k.helper||k.ghost||k.animate?k.helper||"ui-resizable-helper":null});if(this.element[0].nodeName.match(/canvas|textarea|input|select|button|img/i)){this.element.wrap(c('
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i=this.className.match(/ui-resizable-(se|sw|ne|nw|n|e|s|w)/i)}f.axis=i&&i[1]?i[1]:"se"}});if(k.autoHide){this._handles.hide();c(this.element).addClass("ui-resizable-autohide").hover(function(){if(k.disabled){return}c(this).removeClass("ui-resizable-autohide");f._handles.show()},function(){if(k.disabled){return}if(!f.resizing){c(this).addClass("ui-resizable-autohide");f._handles.hide()}})}this._mouseInit()},destroy:function(){this._mouseDestroy();var e=function(g){c(g).removeClass("ui-resizable ui-resizable-disabled ui-resizable-resizing").removeData("resizable").unbind(".resizable").find(".ui-resizable-handle").remove()};if(this.elementIsWrapper){e(this.element);var f=this.element;f.after(this.originalElement.css({position:f.css("position"),width:f.outerWidth(),height:f.outerHeight(),top:f.css("top"),left:f.css("left")})).remove()}this.originalElement.css("resize",this.originalResizeStyle);e(this.originalElement);return this},_mouseCapture:function(f){var g=false;for(var e in this.handles){if(c(this.handles[e])[0]==f.target){g=true}}return !this.options.disabled&&g},_mouseStart:function(g){var j=this.options,f=this.element.position(),e=this.element;this.resizing=true;this.documentScroll={top:c(document).scrollTop(),left:c(document).scrollLeft()};if(e.is(".ui-draggable")||(/absolute/).test(e.css("position"))){e.css({position:"absolute",top:f.top,left:f.left})}this._renderProxy();var k=b(this.helper.css("left")),h=b(this.helper.css("top"));if(j.containment){k+=c(j.containment).scrollLeft()||0;h+=c(j.containment).scrollTop()||0}this.offset=this.helper.offset();this.position={left:k,top:h};this.size=this._helper?{width:e.outerWidth(),height:e.outerHeight()}:{width:e.width(),height:e.height()};this.originalSize=this._helper?{width:e.outerWidth(),height:e.outerHeight()}:{width:e.width(),height:e.height()};this.originalPosition={left:k,top:h};this.sizeDiff={width:e.outerWidth()-e.width(),height:e.outerHeight()-e.height()};this.originalMousePosition={left:g.pageX,top:g.pageY};this.aspectRatio=(typeof j.aspectRatio=="number")?j.aspectRatio:((this.originalSize.width/this.originalSize.height)||1);var i=c(".ui-resizable-"+this.axis).css("cursor");c("body").css("cursor",i=="auto"?this.axis+"-resize":i);e.addClass("ui-resizable-resizing");this._propagate("start",g);return true},_mouseDrag:function(e){var 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    +
    +
    lsWriteVisualizationMesh.hpp File Reference
    +
    +
    +
    + + + + + diff --git a/docs/doxygen/html/lsWriter_8hpp.html b/docs/doxygen/html/lsWriter_8hpp.html index 1efbe4d4..b734ed19 100644 --- a/docs/doxygen/html/lsWriter_8hpp.html +++ b/docs/doxygen/html/lsWriter_8hpp.html @@ -1,9 +1,9 @@ - + - + ViennaLS: include/lsWriter.hpp File Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@
    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -103,7 +109,7 @@
  • include
  • lsWriter.hpp
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/md_CONTRIBUTING.html b/docs/doxygen/html/md_CONTRIBUTING.html index ad2455d1..3cd99714 100644 --- a/docs/doxygen/html/md_CONTRIBUTING.html +++ b/docs/doxygen/html/md_CONTRIBUTING.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Contributing @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -79,12 +85,13 @@
    -
    +
    Contributing
    -

    This is a check list to go through before merging any PR:

    +

    +This is a check list to go through before merging any PR:

    • Make sure everything builds with & without shared libs
    • Run clang-format on ALL files of the project (use format-project.sh)
      • @@ -93,13 +100,14 @@
    • IMPORTANT: Check the ReadMe file in / to make sure nothing changed
    +
    diff --git a/docs/doxygen/html/menu.js b/docs/doxygen/html/menu.js index 97db4c23..433c15b8 100644 --- a/docs/doxygen/html/menu.js +++ b/docs/doxygen/html/menu.js @@ -1,3 +1,26 @@ +/* + @licstart The following is the entire license notice for the + JavaScript code in this file. + + Copyright (C) 1997-2017 by Dimitri van Heesch + + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + + @licend The above is the entire license notice + for the JavaScript code in this file + */ function initMenu(relPath,searchEnabled,serverSide,searchPage,search) { function makeTree(data,relPath) { var result=''; @@ -17,10 +40,11 @@ function initMenu(relPath,searchEnabled,serverSide,searchPage,search) { $('#main-nav').children(':first').addClass('sm sm-dox').attr('id','main-menu'); if (searchEnabled) { if (serverSide) { - $('#main-menu').append('
    • '); + $('#main-menu').append('
    • '); } else { $('#main-menu').append('
    • '); } } $('#main-menu').smartmenus(); } +/* @license-end */ diff --git a/docs/doxygen/html/menudata.js b/docs/doxygen/html/menudata.js index 1e6deec9..e1f6d64d 100644 --- a/docs/doxygen/html/menudata.js +++ b/docs/doxygen/html/menudata.js @@ -1,3 +1,25 @@ +/* +@licstart The following is the entire license notice for the +JavaScript code in this file. + +Copyright (C) 1997-2019 by Dimitri van Heesch + +This program is free software; you can redistribute it and/or modify +it under the terms of version 2 of the GNU General Public License as published by +the Free Software Foundation + +This program is distributed in the hope that it will be useful, +but WITHOUT ANY WARRANTY; without even the implied warranty of +MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +GNU General Public License for more details. + +You should have received a copy of the GNU General Public License along +with this program; if not, write to the Free Software Foundation, Inc., +51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + +@licend The above is the entire license notice +for the JavaScript code in this file +*/ var menudata={children:[ {text:"Main Page",url:"index.html"}, {text:"Related Pages",url:"pages.html"}, @@ -58,7 +80,7 @@ var menudata={children:[ {text:"t",url:"functions_t.html#index_t"}, {text:"v",url:"functions_v.html#index_v"}, {text:"w",url:"functions_w.html#index_w"}, -{text:"~",url:"functions_0x7e.html#index_0x7e"}]}, +{text:"~",url:"functions_~.html#index__7E"}]}, {text:"Functions",url:"functions_func.html",children:[ {text:"a",url:"functions_func.html#index_a"}, {text:"b",url:"functions_func_b.html#index_b"}, @@ -75,7 +97,7 @@ var menudata={children:[ {text:"r",url:"functions_func_r.html#index_r"}, {text:"s",url:"functions_func_s.html#index_s"}, {text:"w",url:"functions_func_w.html#index_w"}, -{text:"~",url:"functions_func_0x7e.html#index_0x7e"}]}, +{text:"~",url:"functions_func_~.html#index__7E"}]}, {text:"Variables",url:"functions_vars.html"}, {text:"Typedefs",url:"functions_type.html"}]}]}, {text:"Files",url:"files.html",children:[ diff --git a/docs/doxygen/html/namespaceAirGapDeposition.html b/docs/doxygen/html/namespaceAirGapDeposition.html index 8e727662..afbcbd70 100644 --- a/docs/doxygen/html/namespaceAirGapDeposition.html +++ b/docs/doxygen/html/namespaceAirGapDeposition.html @@ -1,9 +1,9 @@ - + - + ViennaLS: AirGapDeposition Namespace Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@
    - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -140,8 +146,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +

    @@ -155,8 +162,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    + @@ -170,8 +178,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    + @@ -185,8 +194,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    + @@ -200,8 +210,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    + @@ -215,8 +226,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, and SquareEtch.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, and SquareEtch.cpp.
    + @@ -230,8 +242,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    + @@ -245,8 +258,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, and SquareEtch.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, and SquareEtch.cpp.
    + @@ -260,8 +274,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, and GeometricAdvection.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, and GeometricAdvection.cpp.
    + @@ -275,8 +290,9 @@

    -
    Examples:
    AirGapDeposition.cpp, PeriodicBoundary.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, PeriodicBoundary.cpp, and VoidEtching.cpp.
    + @@ -290,8 +306,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SharedLib.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    + @@ -305,8 +322,9 @@

    -
    Examples:
    AirGapDeposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, and VoidEtching.cpp.
    + @@ -320,8 +338,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    + @@ -335,8 +354,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    + @@ -350,8 +370,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, and SquareEtch.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, GeometricAdvection.cpp, and SquareEtch.cpp.
    + @@ -365,8 +386,9 @@

    -
    Examples:
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    +
    Examples
    AirGapDeposition.cpp, Deposition.cpp, PatternedSubstrate.cpp, PeriodicBoundary.cpp, SquareEtch.cpp, and VoidEtching.cpp.
    + @@ -377,7 +399,7 @@

    AirGapDeposition
  • Generated by - doxygen 1.8.13
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    @@ -62,7 +66,9 @@
    @@ -182,8 +188,9 @@

    -
    Examples:
    Deposition.cpp, and SquareEtch.cpp.
    +
    Examples
    Deposition.cpp, and SquareEtch.cpp.
    +

    @@ -362,7 +369,7 @@

    Deposition
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/namespaceGeometricAdvection.html b/docs/doxygen/html/namespaceGeometricAdvection.html index 4e6367ea..42c5fd2f 100644 --- a/docs/doxygen/html/namespaceGeometricAdvection.html +++ b/docs/doxygen/html/namespaceGeometricAdvection.html @@ -1,9 +1,9 @@ - + - + ViennaLS: GeometricAdvection Namespace Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -156,8 +162,9 @@

    -
    Examples:
    GeometricAdvection.cpp.
    +
    Examples
    GeometricAdvection.cpp.
    +

    @@ -308,7 +315,7 @@

    GeometricAdvection
  • Generated by - doxygen 1.8.13
    • + doxygen 1.8.16 diff --git a/docs/doxygen/html/namespacelsInternal.html b/docs/doxygen/html/namespacelsInternal.html index 679a37e0..99f254e6 100644 --- a/docs/doxygen/html/namespacelsInternal.html +++ b/docs/doxygen/html/namespacelsInternal.html @@ -1,9 +1,9 @@ - + - + ViennaLS: lsInternal Namespace Reference @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
    @@ -101,10 +107,10 @@  Lax Friedrichs integration scheme with constant alpha value for dissipation. This alpha value should be fitted based on the results of the advection and passed to the advection Kernel. More...
      class  lsLocalLaxFriedrichs - Lax Friedrichs integration scheme, which uses a first neighbour stencil to calculate the alpha values for all neighbours. The largest alpha value is then chosen for dissipation. Slower than lsLocalLocalLaxFriedrichs or lsEngquistOsher but more reliable for complex velocity fields. More...
    + Lax Friedrichs integration scheme, which uses a first neighbour stencil to calculate the alpha values for all neighbours. The largest alpha value is then chosen for dissipation. Slower than lsLocalLocalLaxFriedrichs or lsEngquistOsher but more reliable for complex velocity fields. More...
      class  lsLocalLaxFriedrichsAnalytical - Lax Friedrichs integration scheme, which uses alpha values provided by the user in getDissipationAlphas in lsVelocityField. If it is possible to derive analytical solutions for the velocityField and the alpha values, this integration scheme should be used and never otherwise. More...
    + Lax Friedrichs integration scheme, which uses alpha values provided by the user in getDissipationAlphas in lsVelocityField. If it is possible to derive analytical solutions for the velocityField and the alpha values, this integration scheme should be used and never otherwise. More...
      class  lsLocalLocalLaxFriedrichs  Lax Friedrichs integration scheme, which considers only the current point for alpha calculation. Faster than lsLocalLaxFriedrichs but not as accurate. More...
    @@ -162,7 +168,7 @@

    lsInternal
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    • + doxygen 1.8.16

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    @@ -62,7 +66,9 @@
    @@ -223,7 +229,7 @@

    - v -

      • Generated by - doxygen 1.8.13
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    - v -

      • Generated by - doxygen 1.8.13
        • + doxygen 1.8.16
    diff --git a/docs/doxygen/html/namespaces.html b/docs/doxygen/html/namespaces.html index 83faa058..019ec543 100644 --- a/docs/doxygen/html/namespaces.html +++ b/docs/doxygen/html/namespaces.html @@ -1,9 +1,9 @@ - + - + ViennaLS: Namespace List @@ -14,8 +14,9 @@ +/* @license-end */ @@ -37,18 +38,21 @@ - + +/* @license-end */
    @@ -62,7 +66,9 @@
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    • Generated by - doxygen 1.8.13
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See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + + @licend The above is the entire license notice + for the JavaScript code in this file + */ var navTreeSubIndices = new Array(); var arrowDown = '▼'; var arrowRight = '►'; @@ -47,7 +69,6 @@ function localStorageSupported() } } - function storeLink(link) { if (!$("#nav-sync").hasClass('sync') && localStorageSupported()) { @@ -79,15 +100,7 @@ function getScript(scriptName,func,show) script.type = 'text/javascript'; script.onload = func; script.src = scriptName+'.js'; - if ($.browser.msie && $.browser.version<=8) { - // script.onload does not work with older versions of IE - script.onreadystatechange = function() { - if (script.readyState=='complete' || script.readyState=='loaded') { - func(); if (show) showRoot(); - } - } - } - head.appendChild(script); + head.appendChild(script); } function createIndent(o,domNode,node,level) @@ -130,6 +143,7 @@ function gotoAnchor(anchor,aname,updateLocation) var pos, docContent = $('#doc-content'); var ancParent = $(anchor.parent()); if (ancParent.hasClass('memItemLeft') || + ancParent.hasClass('memtitle') || ancParent.hasClass('fieldname') || ancParent.hasClass('fieldtype') || ancParent.is(':header')) @@ -242,7 +256,7 @@ function showRoot() (function (){ // retry until we can scroll to the selected item try { var navtree=$('#nav-tree'); - navtree.scrollTo('#selected',0,{offset:-windowHeight/2}); + navtree.scrollTo('#selected',100,{offset:-windowHeight/2}); } catch (err) { setTimeout(arguments.callee, 0); } @@ -261,12 +275,8 @@ function expandNode(o, node, imm, showRoot) } else { if (!node.childrenVisited) { getNode(o, node); - } if (imm || ($.browser.msie && $.browser.version>8)) { - // somehow slideDown jumps to the start of tree for IE9 :-( - $(node.getChildrenUL()).show(); - } else { - $(node.getChildrenUL()).slideDown("fast"); } + $(node.getChildrenUL()).slideDown("fast"); node.plus_img.innerHTML = arrowDown; node.expanded = true; } @@ -296,7 +306,6 @@ function highlightAnchor() } else { glowEffect(anchor.next(),1000); // normal member } - gotoAnchor(anchor,aname,false); } function selectAndHighlight(hash,n) @@ -458,6 +467,18 @@ function toggleSyncButton(relpath) } } +var loadTriggered = false; +var readyTriggered = false; +var loadObject,loadToRoot,loadUrl,loadRelPath; + +$(window).on('load',function(){ + if (readyTriggered) { // ready first + navTo(loadObject,loadToRoot,loadUrl,loadRelPath); + showRoot(); + } + loadTriggered=true; +}); + function initNavTree(toroot,relpath) { var o = new Object(); @@ -488,10 +509,16 @@ function initNavTree(toroot,relpath) navSync.click(function(){ toggleSyncButton(relpath); }); } - $(window).load(function(){ + if (loadTriggered) { // load before ready navTo(o,toroot,hashUrl(),relpath); showRoot(); - }); + } else { // ready before load + loadObject = o; + loadToRoot = toroot; + loadUrl = hashUrl(); + loadRelPath = relpath; + readyTriggered=true; + } $(window).bind('hashchange', function(){ if (window.location.hash && window.location.hash.length>1){ @@ -514,4 +541,4 @@ function initNavTree(toroot,relpath) } }) } - +/* @license-end */ diff --git a/docs/doxygen/html/navtreedata.js b/docs/doxygen/html/navtreedata.js index 26df6030..b6fdcb32 100644 --- a/docs/doxygen/html/navtreedata.js +++ b/docs/doxygen/html/navtreedata.js @@ -1,9 +1,49 @@ +/* +@licstart The following is the entire license notice for the +JavaScript code in this file. + +Copyright (C) 1997-2019 by Dimitri van Heesch + +This program is free software; you can redistribute it and/or modify +it under the terms of version 2 of the GNU General Public License as published by +the Free Software Foundation + +This program is distributed in the hope that it will be useful, +but WITHOUT ANY WARRANTY; without even the implied warranty of +MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +GNU General Public License for more details. + +You should have received a copy of the GNU General Public License along +with this program; if not, write to the Free Software Foundation, Inc., +51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + +@licend The above is the entire license notice +for the JavaScript code in this file +*/ var NAVTREE = [ [ "ViennaLS", "index.html", [ + [ "Support", "index.html#autotoc_md3", null ], + [ "Releases", "index.html#autotoc_md4", null ], + [ "Building", "index.html#autotoc_md5", [ + [ "Supported Operating Systems", "index.html#autotoc_md6", null ], + [ "System Requirements", "index.html#autotoc_md7", null ] + ] ], + [ "Using ViennaLS in your project", "index.html#autotoc_md8", null ], + [ "Installing (with dependencies already installed)", "index.html#autotoc_md9", null ], + [ "Using the viennaLS python module", "index.html#autotoc_md10", [ + [ "Building the python module", "index.html#autotoc_md11", null ] + ] ], + [ "Integration in CMake projects", "index.html#autotoc_md12", [ + [ "Building examples", "index.html#autotoc_md13", null ], + [ "Shared libraries", "index.html#autotoc_md14", null ] + ] ], + [ "Contributing", "index.html#autotoc_md15", null ], + [ "Authors", "index.html#autotoc_md16", null ], + [ "License", "index.html#autotoc_md17", null ], [ "Contributing", "md_CONTRIBUTING.html", null ], - [ "Namespaces", null, [ - [ "Namespace List", "namespaces.html", "namespaces" ], + [ "Namespaces", "namespaces.html", [ + [ "Namespace List", "namespaces.html", "namespaces_dup" ], [ "Namespace Members", "namespacemembers.html", [ [ "All", "namespacemembers.html", null ], [ "Variables", "namespacemembers_vars.html", null ], @@ -21,8 +61,8 @@ var NAVTREE = [ "Typedefs", "functions_type.html", null ] ] ] ] ], - [ "Files", null, [ - [ "File List", "files.html", "files" ], + [ "Files", "files.html", [ + [ "File List", "files.html", "files_dup" ], [ "File Members", "globals.html", [ [ "All", 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a.highlighted{background:#fff}.sm-dox.sm-vertical a.disabled{background-image:url("tab_b.png")}.sm-dox.sm-vertical a span.sub-arrow{right:8px;top:50%;margin-top:-5px;border-width:5px;border-style:dashed dashed dashed solid;border-color:transparent transparent transparent #555}.sm-dox.sm-vertical>li>ul:before,.sm-dox.sm-vertical>li>ul:after{display:none}.sm-dox.sm-vertical ul a{padding:10px 20px}.sm-dox.sm-vertical ul a:hover,.sm-dox.sm-vertical ul a:focus,.sm-dox.sm-vertical ul a:active,.sm-dox.sm-vertical ul a.highlighted{background:#eee}.sm-dox.sm-vertical ul a.disabled{background:#fff}} \ No newline at end of file diff --git a/include/lsAdvect.hpp b/include/lsAdvect.hpp index 85dc1935..ee6c1cbd 100644 --- a/include/lsAdvect.hpp +++ b/include/lsAdvect.hpp @@ -504,7 +504,8 @@ template class lsAdvect { // if the lower surface is actually outside, i.e. its LS value is // lower or equal - if (iterators[lowerLevelSetId].getValue() <= value + wrappingLayerEpsilon) { + if (iterators[lowerLevelSetId].getValue() <= + value + wrappingLayerEpsilon) { velocity = scheme(it.getStartIndices(), velocities, lowerLevelSetId); break; diff --git a/include/lsWriteVisualizationMesh.hpp b/include/lsWriteVisualizationMesh.hpp index 520573d4..95828f0e 100644 --- a/include/lsWriteVisualizationMesh.hpp +++ b/include/lsWriteVisualizationMesh.hpp @@ -18,6 +18,8 @@ #include #include #include +#include +#include #include @@ -27,7 +29,6 @@ //#define LS_TO_VISUALIZATION_DEBUG #ifdef LS_TO_VISUALIZATION_DEBUG #include -#include #endif /// This algorithm is used to extract tetrahedral volume meshes and triangle @@ -143,7 +144,7 @@ template class lsWriteVisualizationMesh { // go through all cells and change point ids to match the new ids for (vtkIdType cellId = 0; cellId < ugrid->GetNumberOfCells(); ++cellId) { - vtkIdList *cellPoints = vtkIdList::New(); + vtkSmartPointer cellPoints = vtkSmartPointer::New(); ugrid->GetCellPoints(cellId, cellPoints); for (vtkIdType pointId = 0; pointId < cellPoints->GetNumberOfIds(); ++pointId) { @@ -183,7 +184,7 @@ template class lsWriteVisualizationMesh { // go through all cells and delete those with duplicate entries for (vtkIdType cellId = 0; cellId < ugrid->GetNumberOfCells(); ++cellId) { - vtkIdList *cellPoints = vtkIdList::New(); + vtkSmartPointer cellPoints = vtkSmartPointer::New(); ugrid->GetCellPoints(cellId, cellPoints); bool isDuplicate = false; for (vtkIdType pointId = 0; pointId < cellPoints->GetNumberOfIds(); @@ -436,11 +437,11 @@ template class lsWriteVisualizationMesh { void apply() { // check if level sets have enough layers for (unsigned i = 0; i < levelSets.size(); ++i) { - if (levelSets[i]->getLevelSetWidth() < 3) { + if (levelSets[i]->getLevelSetWidth() < 2) { lsMessage::getInstance() - .addWarning("lsWriteVisualizationMesh: Level Set " + - std::to_string(i) + - " should have a width greater than 2! Conversion might fail!") + .addWarning( + "lsWriteVisualizationMesh: Level Set " + std::to_string(i) + + " should have a width greater than 1! Conversion might fail!") .print(); } } @@ -708,5 +709,8 @@ template class lsWriteVisualizationMesh { } }; +// add all template specialisations for this class +PRECOMPILE_PRECISION_DIMENSION(lsWriteVisualizationMesh) + #endif // LS_TO_VISUALIZATION_MESH_HPP #endif // VIENNALS_USE_VTK \ No newline at end of file diff --git a/lib/specialisations.cpp b/lib/specialisations.cpp index 8393e5a3..19dc3cf0 100644 --- a/lib/specialisations.cpp +++ b/lib/specialisations.cpp @@ -22,6 +22,7 @@ #include #include #include +#include #include // now call the specialize macro to precompile them @@ -49,3 +50,4 @@ PRECOMPILE_SPECIALIZE(lsToMesh) PRECOMPILE_SPECIALIZE(lsToSurfaceMesh) PRECOMPILE_SPECIALIZE(lsToVoxelMesh) PRECOMPILE_SPECIALIZE(lsWriter) +PRECOMPILE_SPECIALIZE(lsWriteVisualizationMesh) \ No newline at end of file