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abnormally finished DIAMOND and BWA regarding #127

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SrichandanPadhi opened this issue Jun 27, 2024 · 0 comments
Open

abnormally finished DIAMOND and BWA regarding #127

SrichandanPadhi opened this issue Jun 27, 2024 · 0 comments

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@SrichandanPadhi
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I am running CAT, BAT and RAT, all were running excellent since long time. However, all of sudden, I am getting error messages while running any of them on any data sets. I tried updating DIAMNOND (with CAT and RAT) and BWA (with BAT), still getting the same errors. I am enclosing herewith a snapshot of error message displayed with CAT. I am looking forward for an early solution. Thank you.

[2024-06-27 15:32:57] Importing contig names from /scratch/srichandanp/MEGAHIT/ST-MNFP-7_S190/final.contigs.fasta.
[2024-06-27 15:32:58] Running Prodigal for ORF prediction. Files ./out.CAT.predicted_proteins.faa and ./out.CAT.predicted_proteins.gff will be generated. Do not forget to cite Prodigal when using CAT or BAT in your publication.
[2024-06-27 15:45:05] ORF prediction done!
[2024-06-27 15:45:05] Parsing ORF file ./out.CAT.predicted_proteins.faa
[2024-06-27 15:45:05] ORFs found on 145,207 / 146,962 contigs (98.81%).
[2024-06-27 15:45:05] Homology search with DIAMOND is starting. Please be patient. Do not forget to cite DIAMOND when using CAT or BAT in your publication.
query: ./out.CAT.predicted_proteins.faa
database: /scratch/srichandanp/CAT_pack/20231120_CAT_gtdb/db/2023-11-21_CAT.dmnd
mode: fast
top: 11
no-self-hits: False
number of cores: 48
block-size (billions of letters): 12.0
index-chunks: 1
tmpdir: ./
compress: 0
blast flavour: blastp
[2024-06-27 15:46:15] ERROR: DIAMOND finished abnormally.

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